20(R)-ginsenoside Rg3

ID: ALA1095008

PubChem CID: 46887680

Max Phase: Preclinical

Molecular Formula: C42H72O13

Molecular Weight: 785.03

Molecule Type: Small molecule

This compound is available for customization.

Associated Items:

Names and Identifiers

Synonyms: (20R)-Ginsenoside Rg3 | 20(R)-Ginsenoside Rg3 | 20(R)-ginsenoside Rg3|(20R)-Ginsenoside Rg3|20(R)-Propanaxadiol|(20R)Ginsenoside Rg3|CHEMBL1095008|CHEBI:67990|R-GINSENOSIDE RG3|MFCD11045225|ginsenoside-RE3|20(R)-propanaxidiol|20R-GINSENOSIDE RG3|GINSENOSIDE RG3, (R)-|GINSENOSIDE RG3, (-)-|RWXIFXNRCLMQCD-CZIWJLDFSA-N|BDBM50317536|s9021|AKOS027251123|CCG-270473|1ST162087|Q27136474|(2S,3R,4S,5S,6R)-2-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-2-[[(3S,5R,8R,9R,10R,12R,13R,14R,17S)-12-hydroxy-17-[(2R)-2-hydroxyShow More

Canonical SMILES:  CC(C)=CCC[C@@](C)(O)[C@H]1CC[C@]2(C)[C@@H]1[C@H](O)C[C@@H]1[C@@]3(C)CC[C@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)C(C)(C)[C@@H]3CC[C@]12C

Standard InChI:  InChI=1S/C42H72O13/c1-21(2)10-9-14-42(8,51)22-11-16-41(7)29(22)23(45)18-27-39(5)15-13-28(38(3,4)26(39)12-17-40(27,41)6)54-37-35(33(49)31(47)25(20-44)53-37)55-36-34(50)32(48)30(46)24(19-43)52-36/h10,22-37,43-51H,9,11-20H2,1-8H3/t22-,23+,24+,25+,26-,27+,28-,29-,30+,31+,32-,33-,34+,35+,36-,37-,39-,40+,41+,42+/m0/s1

Standard InChI Key:  RWXIFXNRCLMQCD-CZIWJLDFSA-N

Molfile:  

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M  END

Alternative Forms

  1. Parent:

Associated Targets(Human)

PC-3 (62116 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
A549 (127892 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
TOP2A Tclin DNA topoisomerase II alpha (6317 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
TOP1 Tclin DNA topoisomerase I (7553 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HL-60 (67320 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
PANC-1 (6144 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HCT-8 (3484 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
KB (17409 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
DU-145 (51482 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
U2OS (164939 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HepG2 (196354 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
SIRT1 Tchem NAD-dependent deacetylase sirtuin 1 (3505 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
U-251 (51189 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
AKR1B1 Tclin Aldose reductase (1404 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MCF7 (126967 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
SW480 (6023 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Associated Targets(non-human)

C6 (2371 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
PC-12 (7051 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
SARS-CoV-2 (38078 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
rep Replicase polyprotein 1ab (11336 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Mus musculus (284745 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: YesOral: NoChemical Probe: NoParenteral: No
Molecule Type: Small moleculeTopical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 785.03Molecular Weight (Monoisotopic): 784.4973AlogP: 2.15#Rotatable Bonds: 10
Polar Surface Area: 218.99Molecular Species: NEUTRALHBA: 13HBD: 9
#RO5 Violations: 3HBA (Lipinski): 13HBD (Lipinski): 9#RO5 Violations (Lipinski): 3
CX Acidic pKa: 12.09CX Basic pKa: CX LogP: 1.99CX LogD: 1.99
Aromatic Rings: Heavy Atoms: 55QED Weighted: 0.11Np Likeness Score: 2.67

References

1. Kang KS, Kim HY, Yamabe N, Yokozawa T..  (2006)  Stereospecificity in hydroxyl radical scavenging activities of four ginsenosides produced by heat processing.,  16  (19): [PMID:16901695] [10.1016/j.bmcl.2006.07.071]
2. Wang P, Ownby S, Zhang Z, Yuan W, Li S..  (2010)  Cytotoxicity and inhibition of DNA topoisomerase I of polyhydroxylated triterpenoids and triterpenoid glycosides.,  20  (9): [PMID:20371180] [10.1016/j.bmcl.2010.03.063]
3. Chan HH, Hwang TL, Reddy MV, Li DT, Qian K, Bastow KF, Lee KH, Wu TS..  (2011)  Bioactive constituents from the roots of Panax japonicus var. major and development of a LC-MS/MS method for distinguishing between natural and artifactual compounds.,  74  (4): [PMID:21417387] [10.1021/np100851s]
4. Liu XK, Ye BJ, Wu Y, Lin ZH, Zhao YQ, Piao HR..  (2011)  Synthesis and anti-tumor evaluation of panaxadiol derivatives.,  46  (6): [PMID:21439693] [10.1016/j.ejmech.2011.02.022]
5. Fatmawati S, Ersam T, Yu H, Zhang C, Jin F, Shimizu K..  (2014)  20(S)-Ginsenoside Rh2 as aldose reductase inhibitor from Panax ginseng.,  24  (18): [PMID:25152999] [10.1016/j.bmcl.2014.08.009]
6. Yang JL, Ha TK, Dhodary B, Kim KH, Park J, Lee CH, Kim YC, Oh WK..  (2014)  Dammarane triterpenes as potential SIRT1 activators from the leaves of Panax ginseng.,  77  (7): [PMID:24968750] [10.1021/np5002303]
7. Ye X, Yu S, Liang Y, Huang H, Lian XY, Zhang Z..  (2014)  Bioactive triterpenoid saponins and phenolic compounds against glioma cells.,  24  (22): [PMID:25442304] [10.1016/j.bmcl.2014.09.087]
8. Poon PY, Kwok HH, Yue PY, Yang MS, Mak NK, Wong CK, Wong RN..  (2012)  Cytoprotective effect of 20S-Rg3 on benzo[a]pyrene-induced DNA damage.,  40  (1): [PMID:21956953] [10.1124/dmd.111.039503]
9. Gu CZ, Lv JJ, Zhang XX, Qiao YJ, Yan H, Li Y, Wang D, Zhu HT, Luo HR, Yang CR, Xu M, Zhang YJ..  (2015)  Triterpenoids with Promoting Effects on the Differentiation of PC12 Cells from the Steamed Roots of Panax notoginseng.,  78  (8): [PMID:26200131] [10.1021/acs.jnatprod.5b00027]
10. Yang XW, Ma LY, Zhou QL, Xu W, Zhang YB..  (2018)  SIRT1 activator isolated from artificial gastric juice incubate of total saponins in stems and leaves of Panax ginseng.,  28  (3): [PMID:29317167] [10.1016/j.bmcl.2017.12.067]
11. Bernhard Ellinger, Denisa Bojkova, Andrea Zaliani, Jindrich Cinatl, Carsten Claussen, Sandra Westhaus, Jeanette Reinshagen, Maria Kuzikov, Markus Wolf, Gerd Geisslinger, Philip Gribbon, Sandra Ciesek.  (2020)  Identification of inhibitors of SARS-CoV-2 in-vitro cellular toxicity in human (Caco-2) cells using a large scale drug repurposing collection,  [10.21203/rs.3.rs-23951/v1]
12. Maria Kuzikov, Elisa Costanzi, Jeanette Reinshagen, Francesca Esposito, Laura Vangeel, Markus Wolf, Bernhard Ellinger, Carsten Claussen, Gerd Geisslinger, Angela Corona, Daniela Iaconis, Carmine Talarico, Candida Manelfi, Rolando Cannalire, Giulia Rossetti, Jonas Gossen, Simone Albani, Francesco Musiani, Katja Herzog, Yang Ye, Barbara Giabbai, Nicola Demitri, Dirk Jochmans, Steven De Jonghe, Jasper Rymenants, Vincenzo Summa, Enzo Tramontano, Andrea R. Beccari, Pieter Leyssen, Paola Storici, Johan Neyts, Philip Gribbon, and Andrea Zaliani.  (2020)  Identification of inhibitors of SARS-Cov2 M-Pro enzymatic activity using a small molecule repurposing screen,  [10.6019/CHEMBL4495564]
13. Andrea Zaliani, Laura Vangeel, Jeanette Reinshagen, Daniela Iaconis, Maria Kuzikov, Oliver Keminer, Markus Wolf, Bernhard Ellinger, Francesca Esposito, Angela Corona, Enzo Tramontano, Candida Manelfi, Katja Herzog, Dirk Jochmans, Steven De Jonghe, Winston Chiu, Thibault Francken, Joost Schepers, Caroline Collard, Kayvan Abbasi, Carsten Claussen , Vincenzo Summa, Andrea R. Beccari, Johan Neyts, Philip Gribbon and Pieter Leyssen.  (2020)  Cytopathic SARS-Cov2 screening on VERO-E6 cells in a large repurposing effort,  [10.6019/CHEMBL4495565]
14. Xu GB, Xiao YH, Zhang QY, Zhou M, Liao SG..  (2018)  Hepatoprotective natural triterpenoids.,  145  [PMID:29353722] [10.1016/j.ejmech.2018.01.011]