4-N-Benzyl-5-hydroxymethylcytosine

ID: ALA2063055

Chembl Id: CHEMBL2063055

Cas Number: 1333466-54-8

PubChem CID: 53390169

Max Phase: Preclinical

Molecular Formula: C12H13N3O2

Molecular Weight: 231.25

Molecule Type: Small molecule

Associated Items:

Names and Identifiers

Canonical SMILES:  O=c1nc(NCc2ccccc2)c(CO)c[nH]1

Standard InChI:  InChI=1S/C12H13N3O2/c16-8-10-7-14-12(17)15-11(10)13-6-9-4-2-1-3-5-9/h1-5,7,16H,6,8H2,(H2,13,14,15,17)

Standard InChI Key:  FBVBRZXGCAJDSN-UHFFFAOYSA-N

Alternative Forms

Associated Targets(non-human)

sssIM CpG DNA methylase (38 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: Small moleculeTopical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 231.25Molecular Weight (Monoisotopic): 231.1008AlogP: 0.87#Rotatable Bonds: 4
Polar Surface Area: 78.01Molecular Species: NEUTRALHBA: 4HBD: 3
#RO5 Violations: HBA (Lipinski): 5HBD (Lipinski): 3#RO5 Violations (Lipinski):
CX Acidic pKa: 9.54CX Basic pKa: CX LogP: -0.12CX LogD: -0.12
Aromatic Rings: 2Heavy Atoms: 17QED Weighted: 0.73Np Likeness Score: -0.57

References

1. Plitta B, Adamska E, Giel-Pietraszuk M, Fedoruk-Wyszomirska A, Naskręt-Barciszewska M, Markiewicz WT, Barciszewski J..  (2012)  New cytosine derivatives as inhibitors of DNA methylation.,  55  [PMID:22854677] [10.1016/j.ejmech.2012.07.024]

Source