1-beta-D-arabinofuranosylcytosine(ara-C) analogue

ID: ALA2374454

PubChem CID: 73354862

Max Phase: Preclinical

Molecular Formula: C40H73N3O15P2

Molecular Weight: 897.98

Molecule Type: Small molecule

This compound is available for customization.

Associated Items:

Names and Identifiers

Canonical SMILES:  CCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OP(=O)(O)OC[C@H]1O[C@@H](n2ccc(N)nc2=O)[C@@H](O)[C@@H]1O)OC(=O)CCCCCCCCCCCCC

Standard InChI:  InChI=1S/C40H73N3O15P2/c1-3-5-7-9-11-13-15-17-19-21-23-25-35(44)53-29-32(56-36(45)26-24-22-20-18-16-14-12-10-8-6-4-2)30-54-59(49,50)58-60(51,52)55-31-33-37(46)38(47)39(57-33)43-28-27-34(41)42-40(43)48/h27-28,32-33,37-39,46-47H,3-26,29-31H2,1-2H3,(H,49,50)(H,51,52)(H2,41,42,48)/t32-,33-,37-,38+,39-/m1/s1

Standard InChI Key:  ICFWXMWHAMIZGF-JPDIHLMVSA-N

Molfile:  

     RDKit          2D

 60 61  0  0  0  0  0  0  0  0999 V2000
    9.0709   -1.5501    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.4035   -1.0652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9847   -2.3706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6522   -2.8555    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.4035   -0.2402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6189   -1.3202    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0715   -1.3672    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    3.8340   -2.0817    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.2465   -1.3672    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.8246   -1.2146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1340   -0.6527    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6189    0.0147    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4921   -1.6995    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4058   -2.5200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3090   -0.6527    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2310   -2.7062    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8965   -1.3672    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0715   -0.5422    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1195   -1.6692    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4215   -2.7961    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4215   -4.2251    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5484   -2.4942    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0715   -2.1922    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1215   -4.2251    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5965   -4.2251    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5965   -2.7961    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8340   -3.5106    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2910   -3.5106    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0709    0.2447    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9465   -4.2251    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1840   -3.5106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0733   -3.0049    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.3639    0.7993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3590   -3.5106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8340   -4.9395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2910   -4.9395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6590   -4.9395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1160   -4.9395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8465   -8.5119    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3035   -8.5119    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4785   -8.5119    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0215   -8.5119    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3715   -7.0830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7840   -7.7974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6090   -7.7974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0715   -5.6540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8965   -5.6540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3090   -6.3685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5285   -5.6540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3535   -5.6540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7660   -6.3685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5910   -6.3685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0035   -7.0830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8285   -7.0830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2410   -7.7974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0660   -7.7974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1340   -6.3685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5465   -7.0830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2590   -9.2264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7160   -9.2264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6
  3  1  1  0
  4  3  1  0
  5  2  1  0
  6  2  1  0
  7 17  1  0
  8  9  1  0
  9  7  1  0
 10  1  1  0
 11  6  1  0
 12  5  1  0
 13 10  2  0
 14 13  1  0
 11 15  1  6
 16  3  2  0
 17 15  1  0
 18  7  1  0
 19  8  1  0
 20  8  1  0
 21 25  1  0
 22  8  2  0
 23  7  2  0
 24 30  1  0
 31 25  1  6
 26 20  1  0
 27 21  2  0
 28 24  2  0
  5 29  1  6
 30 34  1  0
 31 26  1  0
 32 14  1  0
 12 33  1  1
 31 34  1  0
 35 21  1  0
 36 24  1  0
 37 35  1  0
 38 36  1  0
 39 42  1  0
 40 41  1  0
 41 56  1  0
 42 45  1  0
 43 58  1  0
 44 43  1  0
 45 44  1  0
 46 37  1  0
 47 46  1  0
 48 47  1  0
 49 38  1  0
 50 49  1  0
 51 50  1  0
 52 51  1  0
 53 52  1  0
 54 53  1  0
 55 54  1  0
 56 55  1  0
 57 48  1  0
 58 57  1  0
 59 39  1  0
 60 40  1  0
  4 14  2  0
 12 11  1  0
M  END

Associated Targets(non-human)

MPC-11 (12 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Mus musculus (284745 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: YesOral: NoChemical Probe: NoParenteral: No
Molecule Type: Small moleculeTopical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 897.98Molecular Weight (Monoisotopic): 897.4517AlogP: 7.55#Rotatable Bonds: 36
Polar Surface Area: 265.49Molecular Species: ACIDHBA: 16HBD: 5
#RO5 Violations: 3HBA (Lipinski): 18HBD (Lipinski): 6#RO5 Violations (Lipinski): 4
CX Acidic pKa: 1.86CX Basic pKa: CX LogP: 7.78CX LogD: 3.03
Aromatic Rings: 1Heavy Atoms: 60QED Weighted: 0.02Np Likeness Score: 0.90

References

1. Ryu EK, Ross RJ, Matsushita T, MacCoss M, Hong CI, West CR..  (1982)  Phospholipid-nucleoside conjugates. 3. Syntheses and preliminary biological evaluation of 1-beta-D-arabinofuranosylcytosine 5'-monophosphate-L-1,2-dipalmitin and selected 1-beta-D-arabinofuranosylcytosine 5-diphosphate-L-1,2-diacylglycerols.,  25  (11): [PMID:7143370] [10.1021/jm00353a010]

Source