N-(2-aminophenyl)-4-((4-(pyridin-3-yl)pyrimidin-2-ylamino)methyl)benzamide

ID: ALA272980

Cas Number: 9003-99-0

PubChem CID: 9865515

Product Number: np006164, Order Now?

Max Phase: Phase

Molecular Formula: C23H20N6O

Molecular Weight: 396.45

Molecule Type: Small molecule

In stock!

Associated Items:

Names and Identifiers

Synonyms: Mocetinostat | MGCD-0103 | MGCD0103 | Mocetinostat|726169-73-9|MGCD0103|MGCD-0103|MGCD 0103|Peroxidase|N-(2-AMINOPHENYL)-4-([[4-(PYRIDIN-3-YL)PYRIMIDIN-2-YL]AMINO]METHYL)BENZAMIDE|9003-99-0|Mocetinostat (MGCD0103)|N-(2-aminophenyl)-4-[[(4-pyridin-3-ylpyrimidin-2-yl)amino]methyl]benzamide|MG0103|MGCD0103 (Mocetinostat)|Mocetinostat (MGCD-0103)|MG 0103|A6GWB8T96J|CHEMBL272980|MG-0103|N-(2-Aminophenyl)-4-((4-pyridin-3-ylpyrimidin-2-ylamino)methyl)benzamide|726169-73-9 (free base)|N-(2-aminophenyl)-Show More

Synonyms from Alternative Forms(2): Mocetinostat dihbr | Mocetinostat dihydrobromide

Canonical SMILES:  Nc1ccccc1NC(=O)c1ccc(CNc2nccc(-c3cccnc3)n2)cc1

Standard InChI:  InChI=1S/C23H20N6O/c24-19-5-1-2-6-21(19)28-22(30)17-9-7-16(8-10-17)14-27-23-26-13-11-20(29-23)18-4-3-12-25-15-18/h1-13,15H,14,24H2,(H,28,30)(H,26,27,29)

Standard InChI Key:  HRNLUBSXIHFDHP-UHFFFAOYSA-N

Molfile:  

     RDKit          2D

 30 33  0  0  0  0  0  0  0  0999 V2000
    2.5000   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5042    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7833   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2167    0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2125   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9333    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7833   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7875    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9292   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0708   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5042    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6458    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3583   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0750    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7875   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2125   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5000   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6458   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3542   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3583   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3583    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0750   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6417   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9333    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9292    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3583    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3625    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6417    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6458    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3625    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  8  1  0
  3  1  1  0
  4  2  1  0
  5  1  2  0
  6  4  1  0
  7  3  2  0
  8 14  1  0
  9  5  1  0
 10  3  1  0
 11  2  2  0
 12  6  2  0
 13 23  2  0
 14 21  2  0
 15 22  1  0
 16  5  1  0
 17  7  1  0
 18 12  1  0
 19 10  1  0
 20 19  1  0
 21 20  1  0
 22 20  2  0
 23  9  1  0
 24  6  1  0
 25  9  2  0
 26 28  2  0
 27 12  1  0
 28 25  1  0
 29 24  2  0
 30 29  1  0
 16 17  2  0
 26 13  1  0
 15  8  2  0
 27 30  2  0
M  END

Alternative Forms

  1. Parent:

    ALA272980

    MOCETINOSTAT
  2. Alternative Forms:

Associated Targets(Human)

HDAC9 Tclin Histone deacetylase 9 (708 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC1 Tclin Histone deacetylase 1 (10854 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC2 Tclin Histone deacetylase 2 (3971 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC3 Tclin Histone deacetylase 3 (3654 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC4 Tclin Histone deacetylase 4 (2328 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC5 Tclin Histone deacetylase 5 (941 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC6 Tclin Histone deacetylase 6 (20808 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC7 Tclin Histone deacetylase 7 (1047 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC8 Tclin Histone deacetylase 8 (4516 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC11 Tclin Histone deacetylase 11 (967 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HCT-116 (91556 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
A549 (127892 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
DU-145 (51482 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HMEC (560 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
T-24 (2342 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
A-431 (6446 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
KCNH2 Tclin HERG (29587 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CYP3A4 Tclin Cytochrome P450 3A4 (53859 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Liver microsomes (16955 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MCF7 (126967 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Jurkat (10389 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HeLa (62764 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC1 Tclin Histone deacetylase (6747 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC3 Tclin Histone deacetylase 3/NCoR1 (102 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
TOP2A Tclin DNA topoisomerase II alpha (6317 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
SW-620 (52400 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HepG2 (196354 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
SJSA-1 (970 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC3 Tclin Histone deacetylase 3/Nuclear receptor corepressor 2 (HDAC3/NCoR2) (735 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
ALB Tchem Serum albumin (2651 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
PC-3 (62116 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
U-937 (7138 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Homo sapiens (32628 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
LTA4H Tchem Leukotriene A4 hydrolase (1442 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
ADORA2A Tclin Adenosine A2a receptor (16305 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Associated Targets(non-human)

Mus musculus (284745 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Rattus norvegicus (775804 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Canis familiaris (36305 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Liver microsomes (8692 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Plasma (6361 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
SARS-CoV-2 (38078 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
rep Replicase polyprotein 1ab (11336 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CT26 (928 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MC-38 (857 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: Small moleculeTopical: NoFirst In Class: NoBlack Box: No
Chirality: YesAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 396.45Molecular Weight (Monoisotopic): 396.1699AlogP: 3.99#Rotatable Bonds: 6
Polar Surface Area: 105.82Molecular Species: NEUTRALHBA: 6HBD: 3
#RO5 Violations: HBA (Lipinski): 7HBD (Lipinski): 4#RO5 Violations (Lipinski):
CX Acidic pKa: CX Basic pKa: 4.37CX LogP: 3.00CX LogD: 3.00
Aromatic Rings: 4Heavy Atoms: 30QED Weighted: 0.43Np Likeness Score: -1.45

References

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12. Bergman JA, Woan K, Perez-Villarroel P, Villagra A, Sotomayor EM, Kozikowski AP..  (2012)  Selective histone deacetylase 6 inhibitors bearing substituted urea linkers inhibit melanoma cell growth.,  55  (22): [PMID:23009203] [10.1021/jm301098e]
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15. Zhang X, Bao B, Yu X, Tong L, Luo Y, Huang Q, Su M, Sheng L, Li J, Zhu H, Yang B, Zhang X, Chen Y, Lu W..  (2013)  The discovery and optimization of novel dual inhibitors of topoisomerase II and histone deacetylase.,  21  (22): [PMID:24095018] [10.1016/j.bmc.2013.09.023]
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21.  (2016)  Selective histone deactylase 6 inhibitors, 
22. Lu W, Yao X, Ouyang P, Dong N, Wu D, Jiang X, Wu Z, Zhang C, Xu Z, Tang Y, Zou S, Liu M, Li J, Zeng M, Lin P, Cheng F, Huang J..  (2017)  Drug Repurposing of Histone Deacetylase Inhibitors That Alleviate Neutrophilic Inflammation in Acute Lung Injury and Idiopathic Pulmonary Fibrosis via Inhibiting Leukotriene A4 Hydrolase and Blocking LTB4 Biosynthesis.,  60  (5): [PMID:28218840] [10.1021/acs.jmedchem.6b01507]
23. Tian Y, Lv W, Li X, Wang C, Wang D, Wang PG, Jin J, Shen J..  (2017)  Stabilizing HDAC11 with SAHA to assay slow-binding benzamide inhibitors.,  27  (13): [PMID:28501514] [10.1016/j.bmcl.2017.05.004]
24. Bernhard Ellinger, Denisa Bojkova, Andrea Zaliani, Jindrich Cinatl, Carsten Claussen, Sandra Westhaus, Jeanette Reinshagen, Maria Kuzikov, Markus Wolf, Gerd Geisslinger, Philip Gribbon, Sandra Ciesek.  (2020)  Identification of inhibitors of SARS-CoV-2 in-vitro cellular toxicity in human (Caco-2) cells using a large scale drug repurposing collection,  [10.21203/rs.3.rs-23951/v1]
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31. Bernhard Ellinger, Justus Dick, Vanessa Lage-Rupprecht, Bruce Schultz, Andrea Zaliani, Marcin Namysl, Stephan Gebel, Ole Pless, Jeanette Reinshagen, Christian Ebeling, Alexander Esser, Marc Jacobs, Carsten Claussen, and Martin Hofmann-Apitius.  (2021)  HDAC6 screening dataset using tau-based substrate in an enzymatic assay yields selective inhibitors and activators,  [10.6019/CHEMBL4808148]
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