Herbicidin B

ID: ALA3109449

Chembl Id: CHEMBL3109449

Cas Number: 55353-32-7

PubChem CID: 171438

Max Phase: Preclinical

Molecular Formula: C18H23N5O9

Molecular Weight: 453.41

Molecule Type: Small molecule

Names and Identifiers

Canonical SMILES:  COC(=O)[C@H]1O[C@@H]2C[C@H]3O[C@@H](n4cnc5c(N)ncnc54)[C@H](OC)[C@H]3O[C@@]2(O)[C@@H](O)[C@@H]1O

Standard InChI:  InChI=1S/C18H23N5O9/c1-28-12-10-6(30-16(12)23-5-22-8-14(19)20-4-21-15(8)23)3-7-18(27,32-10)13(25)9(24)11(31-7)17(26)29-2/h4-7,9-13,16,24-25,27H,3H2,1-2H3,(H2,19,20,21)/t6-,7-,9-,10+,11+,12-,13+,16-,18-/m1/s1

Standard InChI Key:  GZBSICLBZYSADI-DHNWSQMASA-N

Alternative Forms

1. Parent:

   

   ALA3109449

   Herbicidin B

Molecule Features

Natural Product: Yes

Oral: No

Chemical Probe: No

Parenteral: No

Molecule Type: Small molecule

Topical: No

First In Class: No

Black Box: No

Chirality: No

Availability: No

Prodrug: No

Calculated Properties

Molecular Weight: 453.41

Molecular Weight (Monoisotopic): 453.1496

AlogP: -2.54

#Rotatable Bonds: 3

Polar Surface Area: 193.53

Molecular Species: NEUTRAL

HBA: 14

HBD: 4

#RO5 Violations: 1

HBA (Lipinski): 14

HBD (Lipinski): 5

#RO5 Violations (Lipinski): 1

CX Acidic pKa: 10.12

CX Basic pKa: 4.92

CX LogP: -1.94

CX LogD: -1.94

Aromatic Rings: 2

Heavy Atoms: 32

QED Weighted: 0.36

Np Likeness Score: 1.98

References

1. Chai X, Youn UJ, Sun D, Dai J, Williams P, Kondratyuk TP, Borris RP, Davies J, Villanueva IG, Pezzuto JM, Chang LC..  (2014)  Herbicidin congeners, undecose nucleosides from an organic extract of Streptomyces sp. L-9-10.,  77  (2): [PMID:24533857] [10.1021/np4006635]

2. Chen JJ, Rateb ME, Love MS, Xu Z, Yang D, Zhu X, Huang Y, Zhao LX, Jiang Y, Duan Y, McNamara CW, Shen B..  (2018)  Herbicidins from Streptomyces sp. CB01388 Showing Anti- Cryptosporidium Activity.,  81  (4): [PMID:29469575] [10.1021/acs.jnatprod.7b00850]

Source

Source(1):

• Scientific Literature