6-O-(2-Nitrobenzyl)guanosine triphosphate

ID: ALA4076797

Chembl Id: CHEMBL4076797

PubChem CID: 137649074

Max Phase: Preclinical

Molecular Formula: C17H18N6Na3O16P3

Molecular Weight: 658.30

Molecule Type: Small molecule

Associated Items:

Names and Identifiers

Canonical SMILES:  Nc1nc(OCc2ccccc2[N+](=O)[O-])c2ncn([C@@H]3O[C@H](COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])O)[C@@H](O)[C@H]3O)c2n1.[Na+].[Na+].[Na+]

Standard InChI:  InChI=1S/C17H21N6O16P3.3Na/c18-17-20-14-11(15(21-17)35-5-8-3-1-2-4-9(8)23(26)27)19-7-22(14)16-13(25)12(24)10(37-16)6-36-41(31,32)39-42(33,34)38-40(28,29)30;;;/h1-4,7,10,12-13,16,24-25H,5-6H2,(H,31,32)(H,33,34)(H2,18,20,21)(H2,28,29,30);;;/q;3*+1/p-3/t10-,12-,13-,16-;;;/m1.../s1

Standard InChI Key:  AJJIQMOJGGTCOH-DXFKGKJZSA-K

Associated Targets(non-human)

DNA-directed RNA polymerase (39 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: Small moleculeTopical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 658.30Molecular Weight (Monoisotopic): 658.0227AlogP: -0.14#Rotatable Bonds: 12
Polar Surface Area: 331.50Molecular Species: ACIDHBA: 17HBD: 7
#RO5 Violations: 3HBA (Lipinski): 22HBD (Lipinski): 8#RO5 Violations (Lipinski): 3
CX Acidic pKa: 0.90CX Basic pKa: 4.39CX LogP: -3.74CX LogD: -8.28
Aromatic Rings: 3Heavy Atoms: 42QED Weighted: 0.08Np Likeness Score: 0.42

References

1. Ohno K, Sugiyama D, Takeshita L, Kanamori T, Masaki Y, Sekine M, Seio K..  (2017)  Synthesis of photocaged 6-O-(2-nitrobenzyl)guanosine and 4-O-(2-nitrobenzyl) uridine triphosphates for photocontrol of the RNA transcription reaction.,  25  (21): [PMID:28986114] [10.1016/j.bmc.2017.09.032]

Source