N-(2-(Cyclohexylamino)-2-oxoethyl)-N-(6-(hydroxyamino)-6-oxohexyl)-3,5-dimethyl-benzamide

ID: ALA4095934

PubChem CID: 137654094

Max Phase: Preclinical

Molecular Formula: C23H35N3O4

Molecular Weight: 417.55

Molecule Type: Small molecule

This compound is available for customization.

Associated Items:

Names and Identifiers

Canonical SMILES:  Cc1cc(C)cc(C(=O)N(CCCCCC(=O)NO)CC(=O)NC2CCCCC2)c1

Standard InChI:  InChI=1S/C23H35N3O4/c1-17-13-18(2)15-19(14-17)23(29)26(12-8-4-7-11-21(27)25-30)16-22(28)24-20-9-5-3-6-10-20/h13-15,20,30H,3-12,16H2,1-2H3,(H,24,28)(H,25,27)

Standard InChI Key:  FMAYUVHWYXXHME-UHFFFAOYSA-N

Molfile:  

     RDKit          2D

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   29.7930   -2.8147    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   30.1902   -3.5289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.2129   -2.1137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9759   -2.8016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.5788   -2.0874    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   28.5560   -3.5027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.7379   -3.4848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.3181   -4.1850    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.7153   -4.9002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.5367   -4.9108    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9528   -4.2099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.0300   -2.1268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.4499   -1.4258    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   31.4272   -2.8410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   32.2670   -1.4389    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.6634   -2.1565    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.4769   -2.1715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.9006   -1.4724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.5047   -0.7564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.6851   -0.7396    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.0073   -3.5421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.4044   -4.2562    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.2215   -4.2694    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.6187   -4.9836    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.4358   -4.9967    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.8330   -5.7109    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   33.8557   -4.2956    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   33.4130   -6.4119    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   28.9364   -5.6235    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.5010   -4.1715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  1  3  1  0
  1  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11  6  1  0
  3 12  1  0
 12 13  1  0
 12 14  2  0
 13 15  1  0
 15 16  1  0
 15 20  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
  2 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  2  0
 26 28  1  0
 10 29  1  0
  8 30  1  0
M  END

Alternative Forms

  1. Parent:

    ALA4095934

    ---

Associated Targets(Human)

HDAC1 Tclin Histone deacetylase 1/2/3/6 (89 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
A2780cisR (133 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
A2780 (11979 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC1 Tclin Histone deacetylase 1 (10854 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC6 Tclin Histone deacetylase 6 (20808 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC3 Tclin Histone deacetylase 3/Nuclear receptor corepressor 2 (HDAC3/NCoR2) (735 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC2 Tclin Histone deacetylase 2 (3971 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC8 Tclin Histone deacetylase 8 (4516 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CAL-27 (814 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: Small moleculeTopical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 417.55Molecular Weight (Monoisotopic): 417.2628AlogP: 3.26#Rotatable Bonds: 10
Polar Surface Area: 98.74Molecular Species: NEUTRALHBA: 4HBD: 3
#RO5 Violations: HBA (Lipinski): 7HBD (Lipinski): 3#RO5 Violations (Lipinski):
CX Acidic pKa: 8.91CX Basic pKa: CX LogP: 3.07CX LogD: 3.06
Aromatic Rings: 1Heavy Atoms: 30QED Weighted: 0.31Np Likeness Score: -1.02

References

1. Krieger V, Hamacher A, Gertzen CGW, Senger J, Zwinderman MRH, Marek M, Romier C, Dekker FJ, Kurz T, Jung M, Gohlke H, Kassack MU, Hansen FK..  (2017)  Design, Multicomponent Synthesis, and Anticancer Activity of a Focused Histone Deacetylase (HDAC) Inhibitor Library with Peptoid-Based Cap Groups.,  60  (13): [PMID:28574690] [10.1021/acs.jmedchem.7b00197]

Source