(5-(2,6-Difluorobenzylidene)-4-oxo-2-thioxothiazolidin-3-yl)-N-(4-methylpiperazin-1-yl)acetamide

ID: ALA4127204

PubChem CID: 53362014

Max Phase: Preclinical

Molecular Formula: C17H18F2N4O2S2

Molecular Weight: 412.49

Molecule Type: Small molecule

Names and Identifiers

Canonical SMILES:  CN1CCN(NC(=O)CN2C(=O)/C(=C/c3c(F)cccc3F)SC2=S)CC1

Standard InChI:  InChI=1S/C17H18F2N4O2S2/c1-21-5-7-22(8-6-21)20-15(24)10-23-16(25)14(27-17(23)26)9-11-12(18)3-2-4-13(11)19/h2-4,9H,5-8,10H2,1H3,(H,20,24)/b14-9-

Standard InChI Key:  KKPROWUAHDQTCH-ZROIWOOFSA-N

Molfile:  

     RDKit          2D

 27 29  0  0  0  0  0  0  0  0999 V2000
    7.3010  -12.9513    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    8.1182  -12.9513    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3726  -12.1746    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.7096  -11.6924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0509  -12.1746    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7084  -10.8752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5978  -13.6130    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    6.2736  -11.9224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6665  -12.4695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1501  -11.9231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3212  -11.1240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0987  -10.8726    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.7146  -10.5764    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.2697  -10.0735    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.0460   -9.8258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2182   -9.0306    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6142   -8.4796    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.8352   -8.7295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6601   -9.5304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7882   -7.6812    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8901  -12.2148    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2834  -12.7611    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4534  -13.5613    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2355  -13.8123    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8389  -13.2643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7213  -11.4153    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    6.6171  -13.5136    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  1  1  0
  4  6  2  0
  2  7  2  0
  5  8  2  0
  8  9  1  0
  3 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  2  0
 12 14  1  0
 14 15  1  0
 14 19  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 17 20  1  0
  9 21  2  0
 21 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  2  0
 25  9  1  0
 21 26  1  0
 25 27  1  0
M  END

Alternative Forms

1. Parent:

   

   ALA4127204

   2-[(5Z)-5-[(2,6-difluorophenyl)methylidene]-4-oxo-2-sulfanylidene-1,3-thiazolidin-3-yl]-N-(4-methylpiperazin-1-yl)acetamide

Molecule Features

Natural Product: No

Oral: No

Chemical Probe: No

Parenteral: No

Molecule Type: Small molecule

Topical: No

First In Class: No

Black Box: No

Chirality: No

Availability: No

Prodrug: No

Calculated Properties

Molecular Weight: 412.49

Molecular Weight (Monoisotopic): 412.0839

AlogP: 1.44

#Rotatable Bonds: 4

Polar Surface Area: 55.89

Molecular Species: NEUTRAL

HBA: 6

HBD: 1

#RO5 Violations: ┄

HBA (Lipinski): 6

HBD (Lipinski): 1

#RO5 Violations (Lipinski): ┄

CX Acidic pKa: 11.41

CX Basic pKa: 6.97

CX LogP: 1.64

CX LogD: 1.50

Aromatic Rings: 1

Heavy Atoms: 27

QED Weighted: 0.60

Np Likeness Score: -2.02

References

1. Zhang D, Markoulides MS, Stepanovs D, Rydzik AM, El-Hussein A, Bon C, Kamps JJAG, Umland KD, Collins PM, Cahill ST, Wang DY, von Delft F, Brem J, McDonough MA, Schofield CJ..  (2018)  Structure activity relationship studies on rhodanines and derived enethiol inhibitors of metallo-β-lactamases.,  26  (11): [PMID:29655609] [10.1016/j.bmc.2018.02.043]

Source

Source(1):

• Scientific Literature