Muraymycin analogue

ID: ALA413428

PubChem CID: 44341560

Max Phase: Preclinical

Molecular Formula: C63H103N11O16Si2

Molecular Weight: 1326.75

Molecule Type: Small molecule

This compound is available for customization.

Associated Items:

Names and Identifiers

Canonical SMILES:  COc1ccc(Cn2c(=O)ccn([C@@H]3OC([C@H](O)[C@H](NCCCNC(=O)[C@@H](CC(C)C)NC(=O)[C@H](CCC/N=C(\N)N[N+](=O)[O-])NC(=O)N[C@H](C(=O)OCc4ccccc4)C(C)C)C(=O)OC(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)[C@H]3O[Si](C)(C)C(C)(C)C)c2=O)cc1

Standard InChI:  InChI=1S/C63H103N11O16Si2/c1-39(2)36-45(68-54(78)44(26-22-32-67-58(64)71-74(83)84)69-59(81)70-47(40(3)4)56(79)86-38-42-24-20-19-21-25-42)53(77)66-34-23-33-65-48(57(80)88-61(5,6)7)49(76)50-51(89-91(15,16)62(8,9)10)52(90-92(17,18)63(11,12)13)55(87-50)72-35-31-46(75)73(60(72)82)37-41-27-29-43(85-14)30-28-41/h19-21,24-25,27-31,35,39-40,44-45,47-52,55,65,76H,22-23,26,32-34,36-38H2,1-18H3,(H,66,77)(H,68,78)(H3,64,67,71)(H2,69,70,81)/t44-,45+,47-,48-,49+,50?,51+,52+,55+/m0/s1

Standard InChI Key:  PLNTWHXPLIDDDR-NPUPJVQGSA-N

Molfile:  

     RDKit          2D

 92 95  0  0  1  0  0  0  0  0999 V2000
    3.3875   -1.7542    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.8875   -2.4167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7000   -2.3292    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5750   -1.6792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0250   -2.2917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2625   -1.9667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3500   -1.1417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1500   -0.9667    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0833   -6.3792    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7250   -1.0042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0375   -1.5667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7375   -0.5917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0500   -0.8542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5375   -0.9042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6625   -0.3042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1917   -3.1042    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8500   -2.6792    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8750   -6.5917    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4792   -2.2292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3125   -2.1417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4708   -6.0167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6625   -2.6542    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.4125   -3.8917    0.0000 Si  0  0  0  0  0  4  0  0  0  0  0  0
    0.1375   -3.0792    0.0000 Si  0  0  0  0  0  4  0  0  0  0  0  0
   -7.6042   -3.0417    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0292   -2.8292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8958   -2.3542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7167   -1.9292    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3792   -3.3542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7625   -1.5292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2000   -2.9917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4500   -0.5667    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5500   -3.1792    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4750   -6.9542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0750   -2.4417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4125   -4.7167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1250   -3.9042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8625   -5.5667    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2500   -6.2292    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8000   -3.1292    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5000    0.4958    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1292   -1.7167    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8500   -1.4792    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1875   -1.3167    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9042   -2.0167    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4125   -1.0167    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1750   -1.6667    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2500   -2.8667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9500    0.0958    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2500   -5.2167    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0000   -1.2292    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9000    0.2208    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8625   -3.7542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5042   -4.1667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4417   -2.6167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2125   -5.2542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3625   -4.4042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0500   -3.8417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125   -4.5917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0375   -5.1667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3167   -1.8042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5875   -1.4542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8750   -6.0167    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5875   -3.8917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2125   -4.1042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6625   -2.8667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9250   -3.2917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3750   -3.6792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9375   -1.9667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6875   -5.1292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1125   -5.1292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6125   -4.5042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6750   -3.6917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5875   -4.3167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8375   -4.3167    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3500   -1.7542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2000   -3.2542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1750    0.4083    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6125    0.8583    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7625    0.0083    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8333   -4.6292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2792   -4.4667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8750   -4.6792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5625   -1.5042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9750   -1.2917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3625   -6.6792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6125   -3.8417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7250   -4.2042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1583   -3.9792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8500   -0.4792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4375   -0.6917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0667   -0.1792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0
  3  2  1  0
  4  1  1  1
  5  4  1  0
  6  5  1  0
  7  8  1  0
  8  4  1  0
  9 18  1  0
 10  1  1  0
 11 14  1  0
 12  7  1  0
 13 12  1  0
 14 10  2  0
 15 13  1  0
  5 16  1  6
  6 17  1  6
 18 21  1  0
 19 28  1  0
 20 22  1  0
 21 50  2  0
 22 27  1  0
 23 16  1  0
 24 17  1  0
 25 19  1  0
 26 29  1  0
 27 30  1  0
 28 35  1  0
 29 25  1  0
 30 51  1  0
 31  3  1  0
 32 15  1  0
 33  2  2  0
 34  9  1  0
 35 20  1  0
 36 23  1  0
 37 24  1  0
 38  9  2  0
 39 21  1  0
 40 26  1  0
 41 15  2  0
 42 19  2  0
 43 11  2  0
 44 20  2  0
 45 26  2  0
 46 30  2  0
 13 47  1  6
 27 48  1  1
 49 32  1  0
 50 81  1  0
 51 76  1  0
 12 52  1  1
 53 31  1  0
 29 54  1  1
 55 40  1  0
 56 59  2  0
 57 53  1  0
 58 53  2  0
 59 58  1  0
 60 57  2  0
 61 55  1  0
 62 69  1  0
 63 56  1  0
 64 23  1  0
 65 23  1  0
 66 24  1  0
 67 24  1  0
 68 48  1  0
 69 47  1  0
 70 36  1  0
 71 36  1  0
 72 36  1  0
 73 37  1  0
 74 37  1  0
 75 37  1  0
 76 62  1  0
 35 77  1  6
 78 49  1  0
 79 49  1  0
 80 49  1  0
 81 87  1  0
 82 54  1  0
 83 54  1  0
 84 61  2  0
 85 61  1  0
 86 63  1  0
 87 77  1  0
 88 68  1  0
 89 68  1  0
 90 85  2  0
 91 84  1  0
 92 90  1  0
 11  3  1  0
  6  7  1  0
 56 60  1  0
 92 91  2  0
M  CHG  2   9   1  34  -1
M  END

Associated Targets(non-human)

Bacteria (550 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Staphylococcus sp. (496 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Enterococcus sp. (726 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: Small moleculeTopical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 1326.75Molecular Weight (Monoisotopic): 1325.7123AlogP: #Rotatable Bonds:
Polar Surface Area: Molecular Species: HBA: HBD:
#RO5 Violations: HBA (Lipinski): HBD (Lipinski): #RO5 Violations (Lipinski):
CX Acidic pKa: CX Basic pKa: CX LogP: CX LogD:
Aromatic Rings: Heavy Atoms: QED Weighted: Np Likeness Score:

References

1. Yamashita A, Norton E, Petersen PJ, Rasmussen BA, Singh G, Yang Y, Mansour TS, Ho DM..  (2003)  Muraymycins, novel peptidoglycan biosynthesis inhibitors: synthesis and SAR of their analogues.,  13  (19): [PMID:12951123] [10.1016/s0960-894x(03)00671-1]

Source