5-Fluoro-4-(5-fluoro-1-methyl-2,3-dihydro-1H-benzo[d]pyrrolo[1,2-a]imidazol-7-yl)-N-(5-((4-methylpiperazin-1-yl)methyl)pyridin-2-yl)pyrimidin-2-amine

ID: ALA4209318

PubChem CID: 129102598

Max Phase: Preclinical

Molecular Formula: C26H28F2N8

Molecular Weight: 490.56

Molecule Type: Small molecule

Names and Identifiers

Canonical SMILES:  CC1CCc2nc3c(F)cc(-c4nc(Nc5ccc(CN6CCN(C)CC6)cn5)ncc4F)cc3n21

Standard InChI:  InChI=1S/C26H28F2N8/c1-16-3-6-23-32-25-19(27)11-18(12-21(25)36(16)23)24-20(28)14-30-26(33-24)31-22-5-4-17(13-29-22)15-35-9-7-34(2)8-10-35/h4-5,11-14,16H,3,6-10,15H2,1-2H3,(H,29,30,31,33)

Standard InChI Key:  DNURQZGRRIHXKJ-UHFFFAOYSA-N

Molfile:  

     RDKit          2D

 36 41  0  0  0  0  0  0  0  0999 V2000
   15.6642  -13.2536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3787  -12.8411    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   17.0932  -13.2536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0932  -14.0786    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3787  -14.4911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6642  -14.0786    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   14.9498  -12.8411    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   14.2353  -13.2536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2353  -14.0786    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5208  -14.4911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8064  -14.0786    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8064  -13.2536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5208  -12.8411    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.0919  -14.4911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3774  -14.0786    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.6629  -14.4911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9485  -14.0786    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9485  -13.2536    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.6629  -12.8411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3774  -13.2536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2340  -12.8411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.5141  -10.7104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.8497  -11.4641    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.2366  -12.0161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.5221  -11.6036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6936  -10.7966    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.6857   -9.9034    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9712   -9.4909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.3581  -10.0430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8077  -12.0161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8077  -12.8411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.5221  -13.2536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.2366  -12.8411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5511   -9.8714    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.9511  -13.2536    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   17.8077  -14.4911    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  1  6  2  0
  1  7  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
  8 13  2  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 15 20  1  0
 18 21  1  0
 14 15  1  0
 11 14  1  0
  7  8  1  0
 22 23  2  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 22 26  1  0
 27 28  1  0
 28 29  1  0
 26 29  1  0
 22 27  1  0
 30 31  1  0
 31 32  2  0
 32 33  1  0
 24 33  2  0
 25 30  2  0
 29 34  1  0
 33 35  1  0
  3 31  1  0
  4 36  1  0
M  END

Alternative Forms

1. Parent:

   

   ALA4209318

   ---

Molecule Features

Natural Product: No

Oral: No

Chemical Probe: No

Parenteral: No

Molecule Type: Small molecule

Topical: No

First In Class: No

Black Box: No

Chirality: No

Availability: No

Prodrug: No

Calculated Properties

Molecular Weight: 490.56

Molecular Weight (Monoisotopic): 490.2405

AlogP: 4.16

#Rotatable Bonds: 5

Polar Surface Area: 75.00

Molecular Species: NEUTRAL

HBA: 8

HBD: 1

#RO5 Violations: ┄

HBA (Lipinski): 8

HBD (Lipinski): 1

#RO5 Violations (Lipinski): ┄

CX Acidic pKa: 10.27

CX Basic pKa: 7.70

CX LogP: 3.93

CX LogD: 3.45

Aromatic Rings: 4

Heavy Atoms: 36

QED Weighted: 0.45

Np Likeness Score: -1.36

References

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3. Leost, M M and 14 more authors.  2000-10  Paullones are potent inhibitors of glycogen synthase kinase-3beta and cyclin-dependent kinase 5/p25.  [PMID:10998059]

4. Lane, M E ME and 9 more authors.  2001-08-15  A novel cdk2-selective inhibitor, SU9516, induces apoptosis in colon carcinoma cells.  [PMID:11507069]

5. Bramson, H N HN and 20 more authors.  2001-12-06  Oxindole-based inhibitors of cyclin-dependent kinase 2 (CDK2): design, synthesis, enzymatic activities, and X-ray crystallographic analysis.  [PMID:11728181]

6. Mettey, Yvette Y and 9 more authors.  2003-01-16  Aloisines, a new family of CDK/GSK-3 inhibitors. SAR study, crystal structure in complex with CDK2, enzyme selectivity, and cellular effects.  [PMID:12519061]

7. Ring, David B DB and 12 more authors.  2003-03  Selective glycogen synthase kinase 3 inhibitors potentiate insulin activation of glucose transport and utilization in vitro and in vivo.  [PMID:12606497]

8. Sayle, Kerry L KL and 16 more authors.  2003-09-15  Structure-based design of 2-arylamino-4-cyclohexylmethyl-5-nitroso-6-aminopyrimidine inhibitors of cyclin-dependent kinases 1 and 2.  [PMID:12941338]

9. Kuo, Gee-Hong GH and 13 more authors.  2005-03-24  Synthesis and discovery of pyrazine-pyridine biheteroaryl as a novel series of potent vascular endothelial growth factor receptor-2 inhibitors.  [PMID:15771433]

10. Lin, Ronghui R and 11 more authors.  2005-06-30  1-Acyl-1H-[1,2,4]triazole-3,5-diamine analogues as novel and potent anticancer cyclin-dependent kinase inhibitors: synthesis and evaluation of biological activities.  [PMID:15974571]

11. Pennati, Marzia M and 12 more authors.  2005-09  Potentiation of paclitaxel-induced apoptosis by the novel cyclin-dependent kinase inhibitor NU6140: a possible role for survivin down-regulation.  [PMID:16170024]

12. Sridhar, Jayalakshmi J, Akula, Nagaraju N and Pattabiraman, Nagarajan N.  2006-03-24  Selectivity and potency of cyclin-dependent kinase inhibitors.  [PMID:16584130]

13. DePinto, Wanda W and 19 more authors.  2006-11  In vitro and in vivo activity of R547: a potent and selective cyclin-dependent kinase inhibitor currently in phase I clinical trials.  [PMID:17121911]

14. Joshi, Kalpana S KS and 7 more authors.  2007-03  In vitro antitumor properties of a novel cyclin-dependent kinase inhibitor, P276-00.  [PMID:17363486]

15. Jones, Clifford D CD and 18 more authors.  2008-12-15  The discovery of AZD5597, a potent imidazole pyrimidine amide CDK inhibitor suitable for intravenous dosing.  [PMID:18996007]

16. Squires, Matthew S MS and 7 more authors.  2009-02  Biological characterization of AT7519, a small-molecule inhibitor of cyclin-dependent kinases, in human tumor cell lines.  [PMID:19174555]

17. Goh, K C KC and 15 more authors.  2012-02  TG02, a novel oral multi-kinase inhibitor of CDKs, JAK2 and FLT3 with potent anti-leukemic properties.  [PMID:21860433]

18. Cirstea, D D and 15 more authors.  2013-12  Small-molecule multi-targeted kinase inhibitor RGB-286638 triggers P53-dependent and -independent anti-multiple myeloma activity through inhibition of transcriptional CDKs.  [PMID:23807770]

19. Martin, Mathew P MP, Olesen, Sanne H SH, Georg, Gunda I GI and Schönbrunn, Ernst E.  2013-11-15  Cyclin-dependent kinase inhibitor dinaciclib interacts with the acetyl-lysine recognition site of bromodomains.  [PMID:24007471]

20. Paiva, Cody C and 8 more authors.  2015  Cyclin-Dependent Kinase Inhibitor P1446A Induces Apoptosis in a JNK/p38 MAPK-Dependent Manner in Chronic Lymphocytic Leukemia B-Cells.  [PMID:26606677]

21. Sonawane, Yogesh A and 5 more authors.  2016-10-13  Cyclin Dependent Kinase 9 Inhibitors for Cancer Therapy.  [PMID:27171036]

22. Patel, Hetal H and 15 more authors.  2018-06  ICEC0942, an Orally Bioavailable Selective Inhibitor of CDK7 for Cancer Treatment.  [PMID:29545334]

23. Wang, Yiting Y and 6 more authors.  2018-07-23  Design, synthesis and biological evaluation of pyrimidine derivatives as novel CDK2 inhibitors that induce apoptosis and cell cycle arrest in breast cancer cells.  [PMID:29853338]

24. Teng, Yuou and 10 more authors.  2019-12-01  Recent advances in the development of cyclin-dependent kinase 7 inhibitors.  [PMID:31514062]

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Source

Source(1):

• Scientific Literature