9Z-Retinoic acid

ID: ALA451158

PubChem CID: 44579059

Max Phase: Preclinical

Molecular Formula: C20H30O2

Molecular Weight: 302.46

Molecule Type: Small molecule

This compound is available for customization.

Associated Items:

Names and Identifiers

Synonyms: 9Z-Retinoic Acid | 9Z-Retinoic acid|CHEMBL451158

Canonical SMILES:  CC(=C/C=C/C(C)=C/C(=O)O)/C=C/C1C(C)CCCC1(C)C

Standard InChI:  InChI=1S/C20H30O2/c1-15(8-6-9-16(2)14-19(21)22)11-12-18-17(3)10-7-13-20(18,4)5/h6,8-9,11-12,14,17-18H,7,10,13H2,1-5H3,(H,21,22)/b9-6+,12-11+,15-8-,16-14+

Standard InChI Key:  WWDMJSSVVPXVSV-ZVCIMWCZSA-N

Molfile:  

     RDKit          2D

 22 22  0  0  0  0  0  0  0  0999 V2000
   10.4128  -11.2260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4128  -12.0516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1259  -12.4623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8390  -12.0516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8390  -11.2260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1259  -10.8111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5373  -10.2221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7072  -10.2221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5557  -10.8174    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2701  -11.2302    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9867  -10.8216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7010  -11.2343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9891   -9.9960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6986  -12.0598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4088  -12.4768    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4064  -13.3024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1207  -13.7151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6938  -13.7110    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1183  -14.5407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4026  -14.9519    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.8336  -14.9561    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5502  -12.4626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 10 11  1  0
  4  5  1  0
 11 12  2  0
  5  6  1  0
 11 13  1  0
 12 14  1  0
  6  7  1  0
 14 15  2  0
  1  2  1  0
 15 16  1  0
  6  8  1  0
 16 17  2  0
  1  6  1  0
 16 18  1  0
  5  9  1  0
 17 19  1  0
  2  3  1  0
  9 10  2  0
 19 20  1  0
 19 21  2  0
  3  4  1  0
  4 22  1  0
M  END

Alternative Forms

  1. Parent:

Associated Targets(Human)

RXRA Tclin Retinoid X receptor alpha (3637 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HL-60 (67320 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Associated Targets(non-human)

Crabp2 Cellular retinoic acid-binding protein II (21 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: Small moleculeTopical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Biocomponents

Calculated Properties

Molecular Weight: 302.46Molecular Weight (Monoisotopic): 302.2246AlogP: 5.54#Rotatable Bonds: 5
Polar Surface Area: 37.30Molecular Species: ACIDHBA: 1HBD: 1
#RO5 Violations: 1HBA (Lipinski): 2HBD (Lipinski): 1#RO5 Violations (Lipinski): 1
CX Acidic pKa: 4.70CX Basic pKa: CX LogP: 5.46CX LogD: 2.82
Aromatic Rings: Heavy Atoms: 22QED Weighted: 0.53Np Likeness Score: 2.56

References

1. Wada A, Matsuura N, Mizuguchi Y, Nakagawa K, Ito M, Okano T..  (2008)  Preparation and biological evaluation of 5-substituted retinoic acids.,  16  (18): [PMID:18760926] [10.1016/j.bmc.2008.08.025]
2. Wada A, Wang F, Suhara Y, Yamano Y, Okitsu T, Nakagawa K, Okano T..  (2010)  Efficient synthesis and biological evaluation of demethyl geranylgeranoic acid derivatives.,  18  (16): [PMID:20673632] [10.1016/j.bmc.2010.07.003]
3. Alam, M M and 9 more authors.  1995-06-23  Conformationally defined 6-s-trans-retinoic acid analogs. 2. Selective agonists for nuclear receptor binding and transcriptional activity.  [PMID:7608895]
4. Zhang, L L and 7 more authors.  1996-07-05  Discovery of novel retinoic acid receptor agonists having potent antiproliferative activity in cervical cancer cells.  [PMID:8709094]
5. Muccio, D D DD and 10 more authors.  1996-09-13  Conformationally defined 6-s-trans-retinoic acid analogs. 3. Structure-activity relationships for nuclear receptor binding, transcriptional activity, and cancer chemopreventive activity.  [PMID:8809153]
6. Canan Koch, S S SS and 6 more authors.  1999-02-25  Synthesis of retinoid X receptor-specific ligands that are potent inducers of adipogenesis in 3T3-L1 cells.  [PMID:10052980]
7. Michellys, P Y PY and 21 more authors.  2003-06-19  Novel (2E,4E,6Z)-7-(2-alkoxy-3,5-dialkylbenzene)-3-methylocta-2,4,6-trienoic acid retinoid X receptor modulators are active in models of type 2 diabetes.  [PMID:12801232]
8. Haffner, Curt D CD and 13 more authors.  2004-04-08  Structure-based design of potent retinoid X receptor alpha agonists.  [PMID:15056000]
9. Wagner, Carl E and 20 more authors.  2009-10-08  Modeling, synthesis and biological evaluation of potential retinoid X receptor (RXR) selective agonists: novel analogues of 4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)ethynyl]benzoic acid (bexarotene).  [PMID:19791803]
10. Zhou, Hu H and 23 more authors.  2010-06-15  NSAID sulindac and its analog bind RXRalpha and inhibit RXRalpha-dependent AKT signaling.  [PMID:20541701]
11. Fujii, Shuji S and 8 more authors.  2010-09-01  Modification at the acidic domain of RXR agonists has little effect on permissive RXR-heterodimer activation.  [PMID:20656484]
12. Patch, Raymond J RJ and 16 more authors.  2011-02-10  Identification of diaryl ether-based ligands for estrogen-related receptor α as potential antidiabetic agents.  [PMID:21218783]
13. Ohsawa, Fuminori F and 17 more authors.  2013-03-14  Mechanism of retinoid X receptor partial agonistic action of 1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)-1H-benzotriazole-5-carboxylic acid and structural development to increase potency.  [PMID:23391145]
14. Conda-Sheridan, Martin and 10 more authors.  2013-03-28  Design, synthesis, and biological evaluation of indenoisoquinoline rexinoids with chemopreventive potential.  [PMID:23472886]
15. Desphande, Anil and 11 more authors.  2014-01-01  Methyl-substituted conformationally constrained rexinoid agonists for the retinoid X receptors demonstrate improved efficacy for cancer therapy and prevention.  [PMID:24359708]
16. Atigadda, Venkatram R and 8 more authors.  2014-06-26  Methyl substitution of a rexinoid agonist improves potency and reveals site of lipid toxicity.  [PMID:24801499]
17. Ohsawa, Fuminori F, Morishita, Ken-Ichi K, Yamada, Shoya S, Makishima, Makoto M and Kakuta, Hiroki H.  2010-12-09  Modification at the Lipophilic Domain of RXR Agonists Differentially Influences Activation of RXR Heterodimers.  [PMID:24900241]
18. Gege, Christian C, Schlüter, Thomas T and Hoffmann, Thomas T.  2014-11-15  Identification of the first inverse agonist of retinoid-related orphan receptor (ROR) with dual selectivity for RORβ and RORγt.  [PMID:25305688]
19. Atigadda, Venkatram R and 10 more authors.  2015-10-08  Conformationally Defined Rexinoids and Their Efficacy in the Prevention of Mammary Cancers.  [PMID:26331194]
20. Sundén, Henrik H and 9 more authors.  2016-02-11  Chiral Dihydrobenzofuran Acids Show Potent Retinoid X Receptor-Nuclear Receptor Related 1 Protein Dimer Activation.  [PMID:26820900]
21. Pellicciari, Roberto R and 12 more authors.  2016-10-13  Discovery of 3α,7α,11β-Trihydroxy-6α-ethyl-5β-cholan-24-oic Acid (TC-100), a Novel Bile Acid as Potent and Highly Selective FXR Agonist for Enterohepatic Disorders.  [PMID:27652492]
22. Passeri, Daniela and 6 more authors.  2019-08-01  Dissecting the allosteric FXR modulation: a chemical biology approach using guggulsterone as a chemical tool.  [PMID:31673308]

Source