(R)-8-chloro-4-(4-picolinoylbenzyl)-3-(pyridin-2-ylmethyl)-3,4-dihydro-1H-benzo[e][1,4]diazepine-2,5-dione

ID: ALA4545776

PubChem CID: 132213878

Max Phase: Preclinical

Molecular Formula: C28H21ClN4O3

Molecular Weight: 496.95

Molecule Type: Unknown

This compound is available for customization.

Associated Items:

Names and Identifiers

Canonical SMILES:  O=C(c1ccc(CN2C(=O)c3ccc(Cl)cc3NC(=O)[C@H]2Cc2ccccn2)cc1)c1ccccn1

Standard InChI:  InChI=1S/C28H21ClN4O3/c29-20-11-12-22-24(15-20)32-27(35)25(16-21-5-1-3-13-30-21)33(28(22)36)17-18-7-9-19(10-8-18)26(34)23-6-2-4-14-31-23/h1-15,25H,16-17H2,(H,32,35)/t25-/m1/s1

Standard InChI Key:  HYHYWUYQRFEFBF-RUZDIDTESA-N

Molfile:  

 
     RDKit          2D

 36 40  0  0  0  0  0  0  0  0999 V2000
    2.1612   -3.6608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1601   -4.4804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8681   -4.8893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8664   -3.2520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5760   -4.4757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5750   -3.6572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2170   -3.1403    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2223   -4.9872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0189   -3.3163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0245   -4.8001    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.3761   -4.0557    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0438   -5.7847    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5254   -2.6749    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1933   -4.0521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5988   -3.3427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5379   -5.4359    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3518   -5.4356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4133   -3.3413    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.8188   -2.6326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4071   -1.9257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5857   -1.9319    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1839   -2.6411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7572   -6.1426    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5704   -6.1426    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9779   -5.4370    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5663   -4.7300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7544   -4.7334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7951   -5.4356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2024   -4.7272    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4534   -3.2524    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    9.2033   -6.1402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7942   -6.8489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2034   -7.5554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0214   -7.5544    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4286   -6.8411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0172   -6.1375    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  5  2  0
  6  4  2  0
  4  1  1  0
  5  6  1  0
  6  7  1  0
  5  8  1  0
  7  9  1  0
  8 10  1  0
  9 11  1  0
 10 11  1  0
  8 12  2  0
  9 13  2  0
 11 14  1  1
 14 15  1  0
 10 16  1  0
 16 17  1  0
 15 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 15  1  0
 17 23  2  0
 23 24  1  0
 24 25  2  0
 25 26  1  0
 26 27  2  0
 27 17  1  0
 25 28  1  0
 28 29  2  0
  1 30  1  0
 31 32  2  0
 32 33  1  0
 33 34  2  0
 34 35  1  0
 35 36  2  0
 36 31  1  0
 28 31  1  0
M  END

Alternative Forms

  1. Parent:

    ALA4545776

    ---

Associated Targets(non-human)

tcdB Toxin B (126 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
tcdA Toxin A (45 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: UnknownTopical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 496.95Molecular Weight (Monoisotopic): 496.1302AlogP: 4.57#Rotatable Bonds: 6
Polar Surface Area: 92.26Molecular Species: NEUTRALHBA: 5HBD: 1
#RO5 Violations: HBA (Lipinski): 7HBD (Lipinski): 1#RO5 Violations (Lipinski):
CX Acidic pKa: 12.25CX Basic pKa: 4.53CX LogP: 4.85CX LogD: 4.85
Aromatic Rings: 4Heavy Atoms: 36QED Weighted: 0.39Np Likeness Score: -0.93

References

1. Letourneau JJ, Stroke IL, Hilbert DW, Cole AG, Sturzenbecker LJ, Marinelli BA, Quintero JG, Sabalski J, Li Y, Ma L, Pechik I, Stein PD, Webb ML..  (2018)  Synthesis and SAR studies of novel benzodiazepinedione-based inhibitors of Clostridium difficile (C. difficile) toxin B (TcdB).,  28  (23-24): [PMID:30392779] [10.1016/j.bmcl.2018.10.047]

Source