2-[2-methoxy-4-[4-(1-methyl-4-piperidyl)piperazin-1-yl]anilino]-5,11-dimethyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one

ID: ALA4648454

PubChem CID: 156021325

Max Phase: Preclinical

Molecular Formula: C30H38N8O2

Molecular Weight: 542.69

Molecule Type: Unknown

Associated Items:

This compound is not in our inventory system

Names and Identifiers

Canonical SMILES:  COc1cc(N2CCN(C3CCN(C)CC3)CC2)ccc1Nc1ncc2c(n1)N(C)c1ccccc1C(=O)N2C

Standard InChI:  InChI=1S/C30H38N8O2/c1-34-13-11-21(12-14-34)37-15-17-38(18-16-37)22-9-10-24(27(19-22)40-4)32-30-31-20-26-28(33-30)35(2)25-8-6-5-7-23(25)29(39)36(26)3/h5-10,19-21H,11-18H2,1-4H3,(H,31,32,33)

Standard InChI Key:  DWHWHOPFYUJPCQ-UHFFFAOYSA-N

Molfile:  

 
     RDKit          2D

 40 45  0  0  0  0  0  0  0  0999 V2000
   23.0373  -14.6806    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.4531  -15.2649    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.6668  -16.0629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4610  -16.2767    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.6748  -17.0707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.4727  -17.2844    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   24.6864  -18.0823    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.4843  -18.2960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.0643  -17.7118    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   25.8547  -16.9180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.0569  -16.7043    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.8622  -17.9255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.4464  -17.3413    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.2443  -17.5591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.4580  -18.3529    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   27.8738  -18.9371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.0759  -18.7234    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.2518  -18.5665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.0962  -17.6524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.2973  -17.4455    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0864  -16.6468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.2885  -16.4332    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.0749  -15.6353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.2667  -15.5057    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.9819  -14.7339    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5025  -14.1033    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.3065  -14.2402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.5897  -15.0076    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   20.3230  -13.3009    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   20.9072  -12.7166    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.5851  -12.9363    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.5851  -12.1107    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.8387  -13.2809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2405  -12.7113    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4489  -12.9495    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.2610  -13.7508    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8599  -14.3172    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6468  -14.0833    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1566  -14.7339    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   18.7418  -15.4473    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0
  3  2  1  0
  4  3  1  0
  5  4  2  0
  6  5  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
  6 11  1  0
  9 12  1  0
 13 12  1  0
 14 13  1  0
 15 14  1  0
 16 15  1  0
 17 16  1  0
 12 17  1  0
 15 18  1  0
 19  5  1  0
 20 19  2  0
 21 20  1  0
  3 21  2  0
 22 21  1  0
 23 22  1  0
 24 23  2  0
 25 24  1  0
 26 25  2  0
 26 27  1  0
 28 27  2  0
 23 28  1  0
 29 26  1  0
 29 30  1  0
 31 29  1  0
 31 32  2  0
 33 31  1  0
 33 34  1  0
 34 35  2  0
 35 36  1  0
 36 37  2  0
 38 37  1  0
 33 38  2  0
 38 39  1  0
 39 25  1  0
 39 40  1  0
M  END

Alternative Forms

  1. Parent:

    ALA4648454

    ---

Associated Targets(Human)

DCLK1 Tchem Serine/threonine-protein kinase DCLK1 (1025 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MAPK7 Tchem Mitogen-activated protein kinase 7 (929 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
LRRK2 Tchem Leucine-rich repeat serine/threonine-protein kinase 2 (6390 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: UnknownTopical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 542.69Molecular Weight (Monoisotopic): 542.3118AlogP: 3.80#Rotatable Bonds: 5
Polar Surface Area: 80.31Molecular Species: BASEHBA: 9HBD: 1
#RO5 Violations: 1HBA (Lipinski): 10HBD (Lipinski): 1#RO5 Violations (Lipinski): 1
CX Acidic pKa: CX Basic pKa: 9.00CX LogP: 3.23CX LogD: 1.58
Aromatic Rings: 3Heavy Atoms: 40QED Weighted: 0.52Np Likeness Score: -1.18

References

1. Ferguson FM, Liu Y, Harshbarger W, Huang L, Wang J, Deng X, Capuzzi SJ, Muratov EN, Tropsha A, Muthuswamy S, Westover KD, Gray NS..  (2020)  Synthesis and Structure-Activity Relationships of DCLK1 Kinase Inhibitors Based on a 5,11-Dihydro-6H-benzo[e]pyrimido[5,4-b][1,4]diazepin-6-one Scaffold.,  63  (14): [PMID:32530623] [10.1021/acs.jmedchem.0c00596]

Source