9-O-(3-nitrobenzyl)berberine bromide

ID: ALA4759227

PubChem CID: 162658789

Max Phase: Preclinical

Molecular Formula: C26H21BrN2O6

Molecular Weight: 457.46

Molecule Type: Unknown

Names and Identifiers

Canonical SMILES:  COc1ccc2cc3[n+](cc2c1OCc1cccc([N+](=O)[O-])c1)CCc1cc2c(cc1-3)OCO2.[Br-]

Standard InChI:  InChI=1S/C26H21N2O6.BrH/c1-31-23-6-5-17-10-22-20-12-25-24(33-15-34-25)11-18(20)7-8-27(22)13-21(17)26(23)32-14-16-3-2-4-19(9-16)28(29)30;/h2-6,9-13H,7-8,14-15H2,1H3;1H/q+1;/p-1

Standard InChI Key:  QVNIZAVCTVDJJA-UHFFFAOYSA-M

Molfile:  

     RDKit          2D

 35 39  0  0  0  0  0  0  0  0999 V2000
   22.8104  -27.3799    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
   17.3934  -26.1712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.3923  -26.9967    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1055  -27.4087    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1037  -25.7593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.8174  -26.1676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.8183  -26.9926    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.5319  -27.4026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.5264  -25.7543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.2407  -26.1606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.2424  -26.9904    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   20.9579  -27.4015    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.6762  -26.9874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.9544  -25.7420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.6738  -26.1573    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.3911  -25.7420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.9517  -24.9157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.6661  -24.4981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.3879  -24.9103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.0031  -24.3511    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.6614  -23.5932    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.8350  -23.6840    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.1074  -28.2319    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.3954  -28.6451    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6790  -27.4077    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.9664  -26.9956    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.3973  -29.4683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6820  -29.8774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6835  -30.6998    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.3979  -31.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1122  -30.6929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1072  -29.8718    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.8312  -31.1013    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.5417  -30.6855    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.8361  -31.9244    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  3  2  0
  3  4  1  0
  4  7  2  0
  6  5  2  0
  5  2  1  0
  6  7  1  0
  7  8  1  0
  8 11  2  0
 10  9  2  0
  9  6  1  0
 10 11  1  0
 10 14  1  0
 11 12  1  0
 12 13  1  0
 13 15  1  0
 14 15  2  0
 15 16  1  0
 16 19  2  0
 18 17  2  0
 17 14  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 18  1  0
  4 23  1  0
 23 24  1  0
  3 25  1  0
 25 26  1  0
 24 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 31 32  2  0
 32 27  1  0
 33 34  2  0
 33 35  1  0
 31 33  1  0
M  CHG  4   1  -1  11   1  33   1  35  -1
M  END

Molecule Features

Natural Product: No

Oral: No

Chemical Probe: No

Parenteral: No

Molecule Type: Unknown

Topical: No

First In Class: No

Black Box: No

Chirality: No

Availability: No

Prodrug: No

Calculated Properties

Molecular Weight: 457.46

Molecular Weight (Monoisotopic): 457.1394

AlogP: 4.57

#Rotatable Bonds: 5

Polar Surface Area: 83.94

Molecular Species: NEUTRAL

HBA: 6

HBD: ┄

#RO5 Violations: ┄

HBA (Lipinski): 8

HBD (Lipinski): ┄

#RO5 Violations (Lipinski): ┄

CX Acidic pKa: ┄

CX Basic pKa: ┄

CX LogP: 0.38

CX LogD: 0.38

Aromatic Rings: 4

Heavy Atoms: 34

QED Weighted: 0.25

Np Likeness Score: 0.38

References

1. Sobolova K,Hrabinova M,Hepnarova V,Kucera T,Kobrlova T,Benkova M,Janockova J,Dolezal R,Prchal L,Benek O,Mezeiova E,Jun D,Soukup O,Korabecny J.  (2020)  Discovery of novel berberine derivatives with balanced cholinesterase and prolyl oligopeptidase inhibition profile.,  203  [PMID:32688201] [10.1016/j.ejmech.2020.112593]

Source

Source(1):

• Scientific Literature