3-((1H-Benzo[d]imidazole-5-yl)methyl)-1-(4-(4-(2-aminopyridin-4-yl)butoxy)-3-methoxyphenyl)-1-(1-methylpiperidin-4-yl)urea

ID: ALA5081502

PubChem CID: 166629511

Max Phase: Preclinical

Molecular Formula: C31H39N7O3

Molecular Weight: 557.70

Molecule Type: Unknown

Associated Items:

Names and Identifiers

Canonical SMILES:  COc1cc(N(C(=O)NCc2ccc3[nH]cnc3c2)C2CCN(C)CC2)ccc1OCCCCc1ccnc(N)c1

Standard InChI:  InChI=1S/C31H39N7O3/c1-37-14-11-24(12-15-37)38(31(39)34-20-23-6-8-26-27(17-23)36-21-35-26)25-7-9-28(29(19-25)40-2)41-16-4-3-5-22-10-13-33-30(32)18-22/h6-10,13,17-19,21,24H,3-5,11-12,14-16,20H2,1-2H3,(H2,32,33)(H,34,39)(H,35,36)

Standard InChI Key:  RAVPTEGGRHPKOR-UHFFFAOYSA-N

Molfile:  

 
     RDKit          2D

 41 45  0  0  0  0  0  0  0  0999 V2000
   22.5828   -1.7747    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5816   -2.5942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2897   -3.0032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.9993   -2.5937    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.9965   -1.7711    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2879   -1.3658    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.7027   -1.3598    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.4119   -1.7657    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.7077   -3.0012    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.4148   -2.5915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.8736   -3.0022    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.1662   -2.5931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4582   -3.0011    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.1669   -1.7759    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.7508   -2.5920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0428   -3.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.1181   -1.3545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.8273   -1.7604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.5335   -1.3491    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.2427   -1.7551    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.2430   -2.5723    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9514   -2.9782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.6585   -2.5669    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   29.6528   -1.7455    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9438   -1.3433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.3575   -1.3317    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   18.3388   -2.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.3426   -4.2244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0472   -3.8147    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6302   -3.8154    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6303   -3.0016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8564   -2.7501    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   16.3779   -3.4084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8562   -4.0667    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.8730   -3.8194    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1649   -4.2275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5803   -4.2286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5797   -5.0458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1643   -5.0447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.8717   -5.4538    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.8710   -6.2710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  1  1  0
  5  7  1  0
  7  8  1  0
  4  9  1  0
  9 10  1  0
  2 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 13 15  1  0
 15 16  1  0
  8 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  2  0
 25 20  1  0
 24 26  1  0
 16 27  2  0
 27 31  1  0
 30 28  1  0
 28 29  2  0
 29 16  1  0
 30 31  2  0
 31 32  1  0
 32 33  2  0
 33 34  1  0
 34 30  1  0
 11 35  1  0
 35 36  1  0
 35 37  1  0
 37 38  1  0
 36 39  1  0
 38 40  1  0
 40 39  1  0
 40 41  1  0
M  END

Alternative Forms

  1. Parent:

    ALA5081502

    ---

Associated Targets(Human)

QPCT Tchem Glutaminyl-peptide cyclotransferase (1121 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
QPCTL Tchem Glutaminyl-peptide cyclotransferase-like protein (114 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
KCNH2 Tclin HERG (29587 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CYP1A2 Tchem Cytochrome P450 1A2 (26471 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CYP2C9 Tchem Cytochrome P450 2C9 (32119 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CYP2C19 Tchem Cytochrome P450 2C19 (29246 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CYP2D6 Tclin Cytochrome P450 2D6 (33882 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CYP3A4 Tclin Cytochrome P450 3A4 (53859 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Associated Targets(non-human)

Mus musculus (284745 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Qpct Glutaminyl-peptide cyclotransferase (8 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HT-22 (3261 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: UnknownTopical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 557.70Molecular Weight (Monoisotopic): 557.3114AlogP: 4.76#Rotatable Bonds: 11
Polar Surface Area: 121.63Molecular Species: NEUTRALHBA: 7HBD: 3
#RO5 Violations: 1HBA (Lipinski): 10HBD (Lipinski): 4#RO5 Violations (Lipinski): 1
CX Acidic pKa: 12.22CX Basic pKa: 8.28CX LogP: 3.14CX LogD: 1.86
Aromatic Rings: 4Heavy Atoms: 41QED Weighted: 0.23Np Likeness Score: -0.74

References

1. Van Manh N, Hoang VH, Ngo VTH, Ann J, Jang TH, Ha JH, Song JY, Ha HJ, Kim H, Kim YH, Lee J, Lee J..  (2021)  Discovery of highly potent human glutaminyl cyclase (QC) inhibitors as anti-Alzheimer's agents by the combination of pharmacophore-based and structure-based design.,  226  [PMID:34536669] [10.1016/j.ejmech.2021.113819]

Source