4-amino-5-[2-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl]methylsulfanyl]ethyl]-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2-one

ID: ALA5170757

PubChem CID: 168270321

Max Phase: Preclinical

Molecular Formula: C21H28N8O7S

Molecular Weight: 536.57

Names and Identifiers

Canonical SMILES:  Nc1nc(=O)n([C@H]2C[C@H](O)[C@@H](CO)O2)cc1CCSC[C@H]1O[C@@H](n2cnc3c(N)ncnc32)[C@H](O)[C@@H]1O

Standard InChI:  InChI=1S/C21H28N8O7S/c22-17-9(4-28(21(34)27-17)13-3-10(31)11(5-30)35-13)1-2-37-6-12-15(32)16(33)20(36-12)29-8-26-14-18(23)24-7-25-19(14)29/h4,7-8,10-13,15-16,20,30-33H,1-3,5-6H2,(H2,22,27,34)(H2,23,24,25)/t10-,11+,12+,13+,15+,16+,20+/m0/s1

Standard InChI Key:  XDELFONZCZTHLD-FZQXZCJRSA-N

Molfile:  

 
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M  END

Alternative Forms

1. Parent:

   

   ALA5170757

   ---

Molecule Features

Natural Product: No

Oral: No

Chemical Probe: No

Parenteral: No

Molecule Type:

Topical: No

First In Class: No

Black Box: No

Chirality: No

Availability: No

Prodrug: No

Calculated Properties

Molecular Weight: 536.57

Molecular Weight (Monoisotopic): 536.1802

AlogP: -2.22

#Rotatable Bonds: 8

Polar Surface Area: 229.91

Molecular Species: NEUTRAL

HBA: 16

HBD: 6

#RO5 Violations: 3

HBA (Lipinski): 15

HBD (Lipinski): 8

#RO5 Violations (Lipinski): 3

CX Acidic pKa: 12.46

CX Basic pKa: 4.92

CX LogP: -2.69

CX LogD: -2.69

Aromatic Rings: 3

Heavy Atoms: 37

QED Weighted: 0.17

Np Likeness Score: 0.76

References

1. Lamiable-Oulaidi F, Harijan RK, Shaffer KJ, Crump DR, Sun Y, Du Q, Gulab SA, Khan AA, Luxenburger A, Woolhouse AD, Sidoli S, Tyler PC, Schramm VL..  (2022)  Synthesis and Characterization of Transition-State Analogue Inhibitors against Human DNA Methyltransferase 1.,  65  (7.0): [PMID:35324190] [10.1021/acs.jmedchem.1c01869]

Source

Source(1):

• Scientific Literature