4-(4-(4-Benzhydrylpiperazin-1-yl)butyl)-N-hydroxybenzamide

ID: ALA5175813

PubChem CID: 168276122

Max Phase: Preclinical

Molecular Formula: C28H33N3O2

Molecular Weight: 443.59

This compound is available for customization.

Associated Items:

Names and Identifiers

Canonical SMILES:  O=C(NO)c1ccc(CCCCN2CCN(C(c3ccccc3)c3ccccc3)CC2)cc1

Standard InChI:  InChI=1S/C28H33N3O2/c32-28(29-33)26-16-14-23(15-17-26)9-7-8-18-30-19-21-31(22-20-30)27(24-10-3-1-4-11-24)25-12-5-2-6-13-25/h1-6,10-17,27,33H,7-9,18-22H2,(H,29,32)

Standard InChI Key:  VESYDOZDDMFQMJ-UHFFFAOYSA-N

Molfile:  

 
     RDKit          2D

 33 36  0  0  0  0  0  0  0  0999 V2000
   -3.2889   -1.5249    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5848   -1.9549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6073   -2.7754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3292   -3.1661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0310   -2.7403    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0145   -1.9177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2663   -0.7044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9656   -0.2747    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6912   -0.6674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3894   -0.2398    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3716    0.5807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6461    0.9735    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9406    0.5498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5445   -0.3137    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5242    0.5067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7987    0.8994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0935    0.4716    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1209   -0.3527    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8465   -0.7453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3716    0.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3274    0.4324    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0494    0.8231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7486    0.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4705    0.7840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1720    0.3521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8939    0.7428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9178    1.5674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2199    2.0014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4943    1.6087    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6396    1.9582    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3387    1.5222    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6675    2.7754    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.3894    3.1661    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  1  6  1  0
  1  7  1  0
  8  7  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
  8 13  1  0
  7 14  1  0
 15 14  1  0
 16 15  1  0
 17 16  1  0
 17 18  1  0
 14 19  1  0
 19 18  1  0
 17 20  1  0
 21 20  1  0
 22 21  1  0
 23 22  1  0
 23 24  1  0
 25 24  2  0
 26 25  1  0
 27 26  2  0
 27 28  1  0
 24 29  1  0
 29 28  2  0
 27 30  1  0
 30 31  2  0
 30 32  1  0
 33 32  1  0
M  END

Alternative Forms

  1. Parent:

    ALA5175813

    ---

Associated Targets(Human)

HDAC1 Tclin Histone deacetylase 1 (10854 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HDAC4 Tclin Histone deacetylase 4 (2328 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Associated Targets(non-human)

Hdac6 Histone deacetylase 6 (222 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: Topical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 443.59Molecular Weight (Monoisotopic): 443.2573AlogP: 4.54#Rotatable Bonds: 9
Polar Surface Area: 55.81Molecular Species: NEUTRALHBA: 4HBD: 2
#RO5 Violations: HBA (Lipinski): 5HBD (Lipinski): 2#RO5 Violations (Lipinski):
CX Acidic pKa: 9.27CX Basic pKa: 8.35CX LogP: 4.99CX LogD: 4.24
Aromatic Rings: 3Heavy Atoms: 33QED Weighted: 0.29Np Likeness Score: -0.89

References

1. Hashimoto K, Ide S, Arata M, Nakata A, Ito A, Ito TK, Kudo N, Lin B, Nunomura K, Tsuganezawa K, Yoshida M, Nagaoka Y, Sumiyoshi T..  (2022)  Discovery of Benzylpiperazine Derivatives as CNS-Penetrant and Selective Histone Deacetylase 6 Inhibitors.,  13  (7.0): [PMID:35859864] [10.1021/acsmedchemlett.2c00081]

Source