(S)-1-(Acetyl-L-leucyl)-N-((S)-1-(((S)-3-amino-1-(((S)-3-cyclopentyl-1-(((S)-3-methyl-1-(7-phenyl-1H-benzo[d]imidazol-2-yl)butyl)amino)-1-oxopropan-2-yl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)pyrrolidine-2-carboxamide

ID: ALA5199592

PubChem CID: 168290970

Max Phase: Preclinical

Molecular Formula: C47H69N9O6

Molecular Weight: 856.13

Associated Items:

This compound is not in our inventory system

Names and Identifiers

Canonical SMILES:  CC(=O)N[C@@H](CC(C)C)C(=O)N1CCC[C@H]1C(=O)N[C@H](C(=O)N[C@@H](CN)C(=O)N[C@@H](CC1CCCC1)C(=O)N[C@@H](CC(C)C)c1nc2cccc(-c3ccccc3)c2[nH]1)C(C)C

Standard InChI:  InChI=1S/C47H69N9O6/c1-27(2)23-35(42-50-34-20-13-19-33(41(34)54-42)32-17-9-8-10-18-32)51-43(58)36(25-31-15-11-12-16-31)52-44(59)38(26-48)53-46(61)40(29(5)6)55-45(60)39-21-14-22-56(39)47(62)37(24-28(3)4)49-30(7)57/h8-10,13,17-20,27-29,31,35-40H,11-12,14-16,21-26,48H2,1-7H3,(H,49,57)(H,50,54)(H,51,58)(H,52,59)(H,53,61)(H,55,60)/t35-,36-,37-,38-,39-,40-/m0/s1

Standard InChI Key:  JCHRAPWYUDIDKR-UNHORJANSA-N

Molfile:  

 
     RDKit          2D

 62 66  0  0  0  0  0  0  0  0999 V2000
    5.9327    0.8446    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9327    0.0196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6472   -0.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2181   -0.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5036    0.0196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5036    0.8472    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8319    1.3321    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0867    2.1168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6744    2.8256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0812    3.5431    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9089    3.5431    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3218    2.8297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1456    2.8297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5545    3.5486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3774    3.5486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7951    2.8322    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3826    2.1161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5582    2.1161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9113    2.1168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1668    1.3322    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7891   -0.3928    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.0746    0.0196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0746    0.8446    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3601   -0.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3601   -1.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0746   -1.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8326   -1.2922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3847   -1.9052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9722   -2.6198    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1651   -2.4482    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6456    0.0196    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9311   -0.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9311   -1.2179    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2166    0.0196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4978   -0.3928    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2123    0.0196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2123    0.8446    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9268   -0.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9268   -1.2179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2123   -1.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6413   -1.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6413    0.0196    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3559   -0.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3559   -1.2179    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0704    0.0196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8283   -0.3198    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9988   -1.1269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3851   -1.6783    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7832   -1.3828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9538   -2.1901    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3400   -2.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5556   -2.4855    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5106   -3.5486    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3970   -0.8315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1813   -1.0873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3519   -1.8946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7951   -0.5360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3804    0.2932    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9678    1.0077    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1608    0.8362    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2166    0.8446    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9311    1.2571    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0
  2  3  1  0
  4  2  1  0
  5  4  1  6
  5  6  1  0
  7  6  2  0
  8  7  1  0
  9  8  1  0
 10  9  2  0
 11 10  1  0
 12 11  2  0
 12 13  1  0
 14 13  1  0
 15 14  2  0
 16 15  1  0
 17 16  2  0
 18 17  1  0
 13 18  2  0
 19 12  1  0
  8 19  2  0
 20 19  1  0
  6 20  1  0
 21  5  1  0
 22 21  1  0
 22 23  2  0
 24 22  1  0
 24 25  1  6
 25 26  1  0
 27 26  1  0
 28 27  1  0
 29 28  1  0
 30 29  1  0
 26 30  1  0
 24 31  1  0
 31 32  1  0
 32 33  2  0
 32 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  2  0
 36 38  1  0
 38 39  1  6
 39 40  1  0
 39 41  1  0
 38 42  1  0
 42 43  1  0
 43 44  2  0
 45 43  1  1
 46 45  1  0
 46 47  1  0
 47 48  2  0
 47 49  1  0
 49 50  1  1
 50 51  1  0
 51 52  1  0
 51 53  2  0
 49 54  1  0
 54 55  1  0
 55 56  1  0
 55 57  1  0
 58 46  1  0
 59 58  1  0
 60 59  1  0
 45 60  1  0
 34 61  1  1
 61 62  1  0
M  END

Alternative Forms

  1. Parent:

    ALA5199592

    ---

Associated Targets(Human)

MLLT3 Tchem Protein AF-9 (111 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MLLT1 Tchem Protein ENL (186 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MOLM-13 (2241 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
KOPN-8 (317 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
RS4-11 (1012 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MV4-11 (7307 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
K562 (73714 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: Topical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 856.13Molecular Weight (Monoisotopic): 855.5371AlogP: 4.62#Rotatable Bonds: 20
Polar Surface Area: 220.51Molecular Species: NEUTRALHBA: 8HBD: 7
#RO5 Violations: 2HBA (Lipinski): 15HBD (Lipinski): 8#RO5 Violations (Lipinski): 3
CX Acidic pKa: 10.96CX Basic pKa: 8.09CX LogP: 4.00CX LogD: 3.24
Aromatic Rings: 3Heavy Atoms: 62QED Weighted: 0.08Np Likeness Score: -0.33

References

1. Yuan Y, Du L, Tan R, Yu Y, Jiang J, Yao A, Luo J, Tang R, Xiao Y, Sun H..  (2022)  Design, Synthesis, and Biological Evaluations of DOT1L Peptide Mimetics Targeting the Protein-Protein Interactions between DOT1L and MLL-AF9/MLL-ENL.,  65  (11.0): [PMID:35612819] [10.1021/acs.jmedchem.2c00083]

Source