3-(2,6-dioxo-4-(trifluoromethyl)-2,3-dihydropyrimidin-1(6H)-yl)-N-methyl-2-(pyridin-2-yl)imidazo[1,2-a]pyridine-7-carboxamide

ID: ALA5220587

PubChem CID: 168299868

Max Phase: Preclinical

Molecular Formula: C19H13F3N6O3

Molecular Weight: 430.35

Names and Identifiers

Canonical SMILES:  CNC(=O)c1ccn2c(-n3c(=O)cc(C(F)(F)F)[nH]c3=O)c(-c3ccccn3)nc2c1

Standard InChI:  InChI=1S/C19H13F3N6O3/c1-23-16(30)10-5-7-27-13(8-10)26-15(11-4-2-3-6-24-11)17(27)28-14(29)9-12(19(20,21)22)25-18(28)31/h2-9H,1H3,(H,23,30)(H,25,31)

Standard InChI Key:  JTYIQCQZDXKGNU-UHFFFAOYSA-N

Molfile:  

 
     RDKit          2D

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   -1.5139    1.9131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7994    2.3256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0849    1.9131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0849    1.0880    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7994    0.6755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5139    1.0880    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6995    0.8330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6997    2.1680    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1845    1.5005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0094    1.5005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4220    2.2147    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2443    2.2139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6567    1.4994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2477    0.7879    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4235    0.7831    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9131    0.0364    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7098   -0.1770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9231   -0.9736    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3400   -1.5568    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5433   -1.3434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3298   -0.5467    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2930    0.4061    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4667   -0.3333    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2282    2.3255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9425    1.9131    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6567    2.3255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2282    3.1502    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5533   -2.3535    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3501   -2.5670    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.7568   -2.5670    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    1.3400   -3.1502    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  3  2  1  0
  4  3  1  0
  5  4  1  0
  1  6  1  0
  6  5  2  0
  4  7  1  0
  3  8  2  0
  8  9  1  0
  9  7  2  0
 10  9  1  0
 11 10  2  0
 12 11  1  0
 13 12  2  0
 14 13  1  0
 10 15  1  0
 15 14  2  0
 16  7  1  0
 16 17  1  0
 18 17  1  0
 19 18  1  0
 20 19  2  0
 16 21  1  0
 21 20  1  0
 17 22  2  0
 21 23  2  0
  1 24  1  0
 24 25  1  0
 25 26  1  0
 24 27  2  0
 19 28  1  0
 28 29  1  0
 28 30  1  0
 28 31  1  0
M  END

Alternative Forms

1. Parent:

   

   ALA5220587

   ---

Molecule Features

Natural Product: No

Oral: No

Chemical Probe: No

Parenteral: No

Molecule Type:

Topical: No

First In Class: No

Black Box: No

Chirality: No

Availability: No

Prodrug: No

Calculated Properties

Molecular Weight: 430.35

Molecular Weight (Monoisotopic): 430.1001

AlogP: 1.61

#Rotatable Bonds: 3

Polar Surface Area: 114.15

Molecular Species: NEUTRAL

HBA: 7

HBD: 2

#RO5 Violations: ┄

HBA (Lipinski): 9

HBD (Lipinski): 2

#RO5 Violations (Lipinski): ┄

CX Acidic pKa: 9.00

CX Basic pKa: 0.66

CX LogP: 0.98

CX LogD: 0.97

Aromatic Rings: 4

Heavy Atoms: 31

QED Weighted: 0.51

Np Likeness Score: -1.45

References

1. Günther J, Hillig RC, Zimmermann K, Kaulfuss S, Lemos C, Nguyen D, Rehwinkel H, Habgood M, Lechner C, Neuhaus R, Ganzer U, Drewes M, Chai J, Bouché L..  (2022)  BAY-069, a Novel (Trifluoromethyl)pyrimidinedione-Based BCAT1/2 Inhibitor and Chemical Probe.,  65  (21.0): [PMID:36261130] [10.1021/acs.jmedchem.2c00441]

2. Bertrand, Sophie M SM and 31 more authors.  2015-09-24  The Discovery of in Vivo Active Mitochondrial Branched-Chain Aminotransferase (BCATm) Inhibitors by Hybridizing Fragment and HTS Hits.  [PMID:26090771]

Source

Source(1):

• Scientific Literature