2,2'-(azanediylbis(ethane-2,1-diyl))bis(6-([1,4'-bipiperidin]-1'-yl)-5-nitro-1H-benzo[de]isoquinoline-1,3(2H)-dione)

ID: ALA5280600

Max Phase: Preclinical

Molecular Formula: C48H55N9O8

Molecular Weight: 886.02

Associated Items:

This compound is not in our inventory system

Names and Identifiers

Canonical SMILES:  O=C1c2cccc3c(N4CCC(N5CCCCC5)CC4)c([N+](=O)[O-])cc(c23)C(=O)N1CCNCCN1C(=O)c2cccc3c(N4CCC(N5CCCCC5)CC4)c([N+](=O)[O-])cc(c23)C1=O

Standard InChI:  InChI=1S/C48H55N9O8/c58-45-35-11-7-9-33-41(35)37(29-39(56(62)63)43(33)52-23-13-31(14-24-52)50-19-3-1-4-20-50)47(60)54(45)27-17-49-18-28-55-46(59)36-12-8-10-34-42(36)38(48(55)61)30-40(57(64)65)44(34)53-25-15-32(16-26-53)51-21-5-2-6-22-51/h7-12,29-32,49H,1-6,13-28H2

Standard InChI Key:  NFVKSVILTWRSCV-UHFFFAOYSA-N

Molfile:  

 
     RDKit          2D

 65 74  0  0  0  0  0  0  0  0999 V2000
   -4.6426    1.8560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9280    2.2682    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2160    1.8563    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2160    1.0311    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9262    0.6193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6426    1.0274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5068    0.6229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5050   -0.1980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2107   -0.6094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9244   -0.2049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5015    2.2689    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7868    1.8563    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7868    1.0311    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5015    3.0941    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0721    0.6185    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3572    2.2685    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3572    3.0937    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0718    1.8560    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0721    2.2689    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3575    1.8563    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3570    2.2689    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0717    1.8563    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7863    2.2689    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5009    1.8563    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2156    2.2689    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9301    1.8563    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9301    1.0311    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2156    0.6185    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5009    1.0311    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6423    0.6193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6426   -0.2059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9325   -0.6180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2158   -0.2100    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6429    2.2671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3578    1.8547    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3596    1.0337    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2156    3.0941    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7863    0.6185    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9325   -1.4432    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2179   -1.8558    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6470   -1.8558    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3572    0.6149    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3572   -0.2103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0718   -0.6228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7865   -0.2102    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7865    0.6149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0718    1.0274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5011   -0.6228    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5011   -1.4480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2157   -1.8606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9303   -1.4480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9303   -0.6228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2157   -0.2102    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3572   -0.6185    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.0718   -0.2059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7864   -0.6185    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7864   -1.4437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0718   -1.8563    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3572   -1.4437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5011   -1.8563    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.2157   -1.4437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9303   -1.8563    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9303   -2.6815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2157   -3.0941    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5011   -2.6815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0
  3  2  1  0
  4  3  2  0
  5  4  1  0
  1  6  1  0
  6  5  2  0
  4  7  1  0
  8  7  2  0
  9  8  1  0
 10  9  2  0
  5 10  1  0
  3 11  1  0
 12 11  1  0
 13 12  1  0
  7 13  1  0
 11 14  2  0
 13 15  2  0
 16  1  1  0
 16 17  1  0
 16 18  2  0
 12 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 25 24  1  0
 26 25  1  0
 27 26  1  0
 28 27  2  0
 29 28  1  0
 24 29  1  0
 27 30  1  0
 31 30  2  0
 32 31  1  0
 33 32  2  0
 28 33  1  0
 26 34  2  0
 35 34  1  0
 36 35  2  0
 30 36  1  0
 25 37  2  0
 29 38  2  0
 39 32  1  0
 39 40  1  0
 39 41  2  0
 42  6  1  0
 42 43  1  0
 44 43  1  0
 45 44  1  0
 46 45  1  0
 42 47  1  0
 47 46  1  0
 48 45  1  0
 48 49  1  0
 50 49  1  0
 51 50  1  0
 52 51  1  0
 48 53  1  0
 53 52  1  0
 54 31  1  0
 54 55  1  0
 56 55  1  0
 57 56  1  0
 58 57  1  0
 54 59  1  0
 59 58  1  0
 60 57  1  0
 60 61  1  0
 62 61  1  0
 63 62  1  0
 64 63  1  0
 60 65  1  0
 65 64  1  0
M  CHG  4  16   1  17  -1  39   1  40  -1
M  END

Alternative Forms

  1. Parent:

    ALA5280600

    ---

Associated Targets(Human)

T-24 (2342 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MGC-803 (6426 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CNE-2 (385 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
A2780 (11979 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Molecule Features

Natural Product: NoOral: NoChemical Probe: NoParenteral: No
Molecule Type: Topical: NoFirst In Class: NoBlack Box: No
Chirality: NoAvailability: NoProdrug: No

Drug Indications

MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

Mechanisms of Action

Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

Calculated Properties

Molecular Weight: 886.02Molecular Weight (Monoisotopic): 885.4174AlogP: 6.20#Rotatable Bonds: 12
Polar Surface Area: 186.03Molecular Species: BASEHBA: 13HBD: 1
#RO5 Violations: 3HBA (Lipinski): 17HBD (Lipinski): 1#RO5 Violations (Lipinski): 3
CX Acidic pKa: CX Basic pKa: 10.07CX LogP: 5.13CX LogD: -0.98
Aromatic Rings: 4Heavy Atoms: 65QED Weighted: 0.07Np Likeness Score: -0.58

References

1. Chen XM, Zhou JY, Liu SQ, Song LH, Wang HL, Wang Q, Liang SM, Lu L, Wei JH, Huang R, Zhang Y..  (2023)  Design, synthesis, and antitumor evaluation of morpholine substituted bisnaphthalimides as DNA targeting agents.,  85  [PMID:36894107] [10.1016/j.bmcl.2023.129218]

Source