INDIGO

ID: ALA599552

Max Phase: Phase

Molecular Formula: C16H10N2O2

Molecular Weight: 262.27

Molecule Type: Small molecule

Associated Items:

Representations

Synonyms (16): Ao201 | Ci 73000 | Indigo | Indigo blue | Indigo whole | Indigofera orthocarpa whole | Indigofera tinctoria | Indigofera tinctoria whole | Indigotin | Nila whole | Nili whole | Nilika whole | Nilini whole | True indigo whole | C.I.73000 | NSC-8645
Synonyms from Alternative Forms(16):

    Canonical SMILES:  O=C1/C(=C2\Nc3ccccc3C2=O)Nc2ccccc21

    Standard InChI:  InChI=1S/C16H10N2O2/c19-15-9-5-1-3-7-11(9)17-13(15)14-16(20)10-6-2-4-8-12(10)18-14/h1-8,17-18H/b14-13+

    Standard InChI Key:  COHYTHOBJLSHDF-BUHFOSPRSA-N

    Associated Targets(Human)

    Cyclin-dependent kinase 5/CDK5 activator 1 3697 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Cyclin-dependent kinase 1/cyclin B 899 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Glycogen synthase kinase-3 736 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Cyclin-dependent kinase 2 9050 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Tyrosine-protein kinase SRC 10310 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Beta-chymotrypsin 261 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Aryl hydrocarbon receptor 1071 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Tyrosyl-DNA phosphodiesterase 1 345557 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Aldehyde dehydrogenase 1A1 77053 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 93046 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Ubiquitin carboxyl-terminal hydrolase 1 22556 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    A549 127892 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    BGC-823 3035 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    MCF7 126967 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Bel-7402 4577 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    KETR3 279 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    HCT-8 3484 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    DNA-(apurinic or apyrimidinic site) lyase 38016 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Cyclin-dependent kinase 2/cyclin E1 1877 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Associated Targets(non-human)

    Malate dehydrogenase 29 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Beta-lactamase AmpC 62480 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Inositol monophosphatase 1 16203 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    6-phospho-1-fructokinase 7870 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Plasmodium falciparum 966862 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Luciferin 4-monooxygenase 66902 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Human immunodeficiency virus 1 70413 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Human alphaherpesvirus 1 11089 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Mycobacterium tuberculosis 203094 Activities

    Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

    Molecule Features

    Natural Product: NoOral: NoChemical Probe: NoParenteral: No
    Molecule Type: Small moleculeTopical: NoFirst In Class: NoBlack Box: No
    Chirality: NoAvailability: NoProdrug: No

    Drug Indications

    MESH IDMESH Heading EFO IDsEFO TermsMax Phase for IndicationReferences

    Mechanisms of Action

    Mechanism of ActionAction Typetarget IDTarget NameTarget TypeTarget OrganismBinding Site NameReferences

    Properties

    Molecular Weight: 262.27Molecular Weight (Monoisotopic): 262.0742AlogP: 2.81#Rotatable Bonds: 0
    Polar Surface Area: 58.20Molecular Species: NEUTRALHBA: 4HBD: 2
    #RO5 Violations: 0HBA (Lipinski): 4HBD (Lipinski): 2#RO5 Violations (Lipinski): 0
    CX Acidic pKa: 12.18CX Basic pKa: CX LogP: 2.65CX LogD: 2.65
    Aromatic Rings: 2Heavy Atoms: 20QED Weighted: 0.72Np Likeness Score: 0.31

    References

    1. McGovern SL, Shoichet BK..  (2003)  Kinase inhibitors: not just for kinases anymore.,  46  (8): [PMID:12672248] [10.1021/jm020427b]
    2. Sasaki S, Mizushima T, Hashimoto T, Maeda M, Kazuhisa S.  (1994)  3-Acetoxy-2,2-bi-1H-indol as a novel inhibitor of ATP binding to DnaA, the protein initiating chromosomal replication in escherichia coli,  (14): [10.1016/S0960-894X(00)80378-9]
    3. Guengerich FP, Sorrells JL, Schmitt S, Krauser JA, Aryal P, Meijer L..  (2004)  Generation of new protein kinase inhibitors utilizing cytochrome p450 mutant enzymes for indigoid synthesis.,  47  (12): [PMID:15163202] [10.1021/jm030561b]
    4. Fujita Y, Yonehara M, Tetsuhashi M, Noguchi-Yachide T, Hashimoto Y, Ishikawa M..  (2010)  beta-Naphthoflavone analogs as potent and soluble aryl hydrocarbon receptor agonists: improvement of solubility by disruption of molecular planarity.,  18  (3): [PMID:20060304] [10.1016/j.bmc.2009.12.036]
    5. PubChem BioAssay data set, 
    6. Chen M, Gan L, Lin S, Wang X, Li L, Li Y, Zhu C, Wang Y, Jiang B, Jiang J, Yang Y, Shi J..  (2012)  Alkaloids from the root of Isatis indigotica.,  75  (6): [PMID:22694318] [10.1021/np3002833]
    7. Klein LL, Petukhova V, Wan B, Wang Y, Santasiero BD, Lankin DC, Pauli GF, Franzblau SG..  (2014)  A novel indigoid anti-tuberculosis agent.,  24  (1): [PMID:24314672] [10.1016/j.bmcl.2013.11.024]
    8. PubChem BioAssay data set, 
    9. PubChem BioAssay data set, 
    10. PubChem BioAssay data set, 
    11. Ibrahim HS, Abou-Seri SM, Ismail NS, Elaasser MM, Aly MH, Abdel-Aziz HA..  (2016)  Bis-isatin hydrazones with novel linkers: Synthesis and biological evaluation as cytotoxic agents.,  108  [PMID:26706352] [10.1016/j.ejmech.2015.11.047]
    12. Unpublished dataset, 
    13. Lin L, Dai Y, Xia Y..  (2022)  An overview of aryl hydrocarbon receptor ligands in the Last two decades (2002-2022): A medicinal chemistry perspective.,  244  [PMID:36274276] [10.1016/j.ejmech.2022.114845]