SY-5609 - 99%, high purity , CAS No.2417302-07-7

  • ≥99%
Item Number
S646370
Grouped product items
SKUSizeAvailabilityPrice Qty
S646370-5mg
5mg
Available within 8-12 weeks(?)
Production requires sourcing of materials. We appreciate your patience and understanding.
$440.90
S646370-10mg
10mg
Available within 8-12 weeks(?)
Production requires sourcing of materials. We appreciate your patience and understanding.
$710.90
S646370-25mg
25mg
Available within 8-12 weeks(?)
Production requires sourcing of materials. We appreciate your patience and understanding.
$1,420.90
View related series
CDK Cell Cycle/DNA Damage

Basic Description

SynonymsCDK7-IN-3 | BDBM50583929 | 1H-Indole-6-carbonitrile, 7-(dimethylphosphinyl)-3-(2-(((3S)-6,6-dimethyl-3-piperidinyl)amino)-5-(trifluoromethyl)-4-pyrimidinyl)- | JDJOUBVVSQDIRC-AWEZNQCLSA-N | EN300-37407429 | 1H-Indole-6-carbonitrile, 7-(dimethylphosphinyl)
Specifications & Purity≥99%
Biochemical and Physiological MechanismsSY-5609 (CDK7-IN-3) is an orally active, highly selective, noncovalent CDK7 inhibitor with a K D of 0.065 nM. SY-5609 shows poor inhibition on CDK2 (K i =2600 nM), CDK9 (K i =960 nM), CDK12 (K i =870 nM). SY-5609 induces apoptosis in tumor cells and has a
Storage TempStore at 2-8°C
Shipped InWet ice
Product Description

SY-5609 (CDK7-IN-3) is an orally active, highly selective, noncovalent CDK7 inhibitor with a K D of 0.065 nM. SY-5609 shows poor inhibition on CDK2 (K i =2600 nM), CDK9 (K i =960 nM), CDK12 (K i =870 nM). SY-5609 induces apoptosis in tumor cells and has antitumor activity

In Vitro

SY-5609 (0.01-10000 nM; 72 hours) demonstrates strong antiproliferative effects in triple negative breast cancer (TNBC) and ovarian (OVA) cancer cells. SY-5609 (100-500 nM; 48, 72 hours) induces apoptosis. SY-5609 (100-500 nM; 48 hours) induces G2/M cell cycle arrest in HCC70 cells. SY-5609 (25-500 nM; 6-48 hours) results in inhibition of the phosphorylation of CDK2 at Thr160 via loss of CAK function for 24 and 48 h. SY-5609 (compound 101; 126.4 pM-4 µM; 72 hours) has an EC 50 of 5.6 nM in HCC70 cell line. MCE has not independently confirmed the accuracy of these methods. They are for reference only. Cell Proliferation AssayCell Line: HCC70, MDA-MB453, COV504, A2780, OVCAR3, CAOV3 cells Concentration: 0.01-10000 nM Incubation Time: 72 hours Result: Demonstrated strong antiproliferative effects with IC 50 of 1-6 nM. Apoptosis AnalysisCell Line: HCC70, MDA-MB-468, CAOV3 and OVCAR3 cells Concentration: 100, 250, 500 nM Incubation Time: 48 and 72 hours Result: Induced apoptosis. Cell Cycle AnalysisCell Line: HCC70 cells Concentration: 100, 250, 500 nM Incubation Time: 48 hours Result: Induced G2/M cell cycle arrest. Western Blot AnalysisCell Line: HCC70 cells Concentration: 25, 50, 100, 250, 500 nM Incubation Time: 6, 24, 48 hours Result: Resulted in inhibition of the phosphorylation of CDK2 at Thr160 via loss of CAK function for 24 and 48 h.

In Vivo

SY-5609 (2 mg/kg/day; orally; for 21 days) induces tumor regression over the 21-day dosing period . Daily oral dosing of 2 mg/kg SY-5609 in mice provided a plasma exposure of 261.28 ng h/mL with a C max of 50.67 ng/mL (103 nM) and an elimination half-life of 3.33 h . MCE has not independently confirmed the accuracy of these methods. They are for reference only. Animal Model: Six-to-eight-week-old Balb/c nude female mice with HCC70 cell line Dosage: 2 mg/kg Administration: Orally; daily; for 21 days Result: Induced tumor regression over the 21-day dosing period and was well tolerated. No regrowth of tumor was observed out to day 28.

Form:Solid

IC50& Target:CDK7 0.065 nM (Kd) CDK2 2600 nM (Ki) CDK9 960 nM (Ki) CDK12 870 nM (Ki)

Associated Targets(Human)

CDK2 Tchem Cyclin-dependent kinase 2 (9050 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CDK7 Tchem Cyclin-dependent kinase 7 (1512 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MDA-MB-468 (9477 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
NHDF (1164 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
OVCAR-3 (48710 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Caov-3 cell line (328 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MDA-MB-231 (73002 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
HCC70 (557 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CCNE1 Tchem Cyclin-dependent kinase 2/cyclin E1 (1877 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CCNH Tbio Cyclin-dependent kinase 7/ cyclin H (714 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CCNT1 Tchem CDK9/cyclin T1 (2643 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CCNK Tbio CDK12/Cyclin K (892 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID

Names and Identifiers

IUPAC Name 7-dimethylphosphoryl-3-[2-[[(3S)-6,6-dimethylpiperidin-3-yl]amino]-5-(trifluoromethyl)pyrimidin-4-yl]-1H-indole-6-carbonitrile
INCHI InChI=1S/C23H26F3N6OP/c1-22(2)8-7-14(10-30-22)31-21-29-12-17(23(24,25)26)18(32-21)16-11-28-19-15(16)6-5-13(9-27)20(19)34(3,4)33/h5-6,11-12,14,28,30H,7-8,10H2,1-4H3,(H,29,31,32)/t14-/m0/s1
InChi Key JDJOUBVVSQDIRC-AWEZNQCLSA-N
Canonical SMILES CC1(CCC(CN1)NC2=NC=C(C(=N2)C3=CNC4=C3C=CC(=C4P(=O)(C)C)C#N)C(F)(F)F)C
Isomeric SMILES CC1(CC[C@@H](CN1)NC2=NC=C(C(=N2)C3=CNC4=C3C=CC(=C4P(=O)(C)C)C#N)C(F)(F)F)C
Alternate CAS 2417302-07-7
PubChem CID 146662729
MeSH Entry Terms (S)-7-(dimethylphosphoryl)-3-(2-((6,6-dimethylpiperidin- 3-yl)amino)-5-(trifluoromethyl)pyrimidin-4-yl)-1H-indole- 6-carbonitrile;SY-5609
Molecular Weight 490.46

Certificates

Certificate of Analysis(COA)

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Chemical and Physical Properties

SolubilityDMSO : 40 mg/mL (81.56 mM; Need ultrasonic)

Related Documents

Solution Calculators